GridCollection Class Reference

#include <GridCollection.h>

Inheritance diagram for GridCollection:

Collaboration diagram for GridCollection:

Public Types
enum	{   THEmask = GridCollectionData::THEmask, THEinverseVertexDerivative, THEinverseCenterDerivative, THEvertex = GridCollectionData::THEvertex,   THEcenter = GridCollectionData::THEcenter, THEcorner = GridCollectionData::THEcorner, THEvertexDerivative = GridCollectionData::THEvertexDerivative, THEcenterDerivative = GridCollectionData::THEcenterDerivative,   THEvertexJacobian = GridCollectionData::THEvertexJacobian, THEcenterJacobian = GridCollectionData::THEcenterJacobian, THEcellVolume = GridCollectionData::THEcellVolume, THEcenterNormal = GridCollectionData::THEcenterNormal,   THEcenterArea = GridCollectionData::THEcenterArea, THEfaceNormal = GridCollectionData::THEfaceNormal, THEfaceArea = GridCollectionData::THEfaceArea, THEvertexBoundaryNormal = GridCollectionData::THEvertexBoundaryNormal,   THEcenterBoundaryNormal = GridCollectionData::THEcenterBoundaryNormal, THEcenterBoundaryTangent = GridCollectionData::THEcenterBoundaryTangent, THEboundingBox = GridCollectionData::THEboundingBox, THEusualSuspects = GridCollectionData::THEusualSuspects,   EVERYTHING = GridCollectionData::EVERYTHING }
enum	{ USEdifferenceApproximation, COMPUTEgeometry = GridCollectionData::COMPUTEgeometry, COMPUTEgeometryAsNeeded = GridCollectionData::COMPUTEgeometryAsNeeded, COMPUTEtheUsual = GridCollectionData::COMPUTEtheUsual }
enum	{   ISinterpolationPoint = GridCollectionData::ISinterpolationPoint, ISdiscretizationPoint = GridCollectionData::ISdiscretizationPoint, ISghostPoint = GridCollectionData::ISghostPoint, ISinteriorBoundaryPoint = GridCollectionData::ISinteriorBoundaryPoint,   USESbackupRules = GridCollectionData::USESbackupRules, IShiddenByRefinement = GridCollectionData::IShiddenByRefinement, ISreservedBit2 = GridCollectionData::ISreservedBit2, ISreservedBit1 = GridCollectionData::ISreservedBit1,   ISreservedBit0 = GridCollectionData::ISreservedBit0, GRIDnumberBits = GridCollectionData::GRIDnumberBits, ISusedPoint = GridCollectionData::ISusedPoint }
typedef GridCollectionData	RCData
Public Types inherited from GenericGridCollection
enum	{   THEbaseGrid = GenericGridCollectionData::THEbaseGrid, THErefinementLevel = GenericGridCollectionData::THErefinementLevel, THEcomponentGrid = GenericGridCollectionData::THEcomponentGrid, THEmultigridLevel = GenericGridCollectionData::THEmultigridLevel,   THEdomain = GenericGridCollectionData::THEdomain, NOTHING = GenericGridCollectionData::NOTHING, THEusualSuspects = GenericGridCollectionData::THEusualSuspects, THElists = GenericGridCollectionData::THElists,   EVERYTHING = GenericGridCollectionData::EVERYTHING }
enum	{ COMPUTEnothing = GenericGridCollectionData::COMPUTEnothing, COMPUTEtheUsual = GenericGridCollectionData::COMPUTEtheUsual, COMPUTEfailed = GenericGridCollectionData::COMPUTEfailed }
typedef GenericGridCollectionData	RCData

Public Member Functions
Integer &	numberOfDimensions ()
const Integer &	numberOfDimensions () const
	GridCollection (const Integer numberOfDimensions_=0, const Integer numberOfGrids_=0)
	GridCollection (const GridCollection &x, const CopyType ct=DEEP)
virtual	~GridCollection ()
GridCollection &	operator= (const GridCollection &x)
MappedGrid &	operator[] (const Integer &i)
const MappedGrid &	operator[] (const Integer &i) const
void	reference (const GridCollection &x)
void	reference (GridCollectionData &x)
virtual void	breakReference ()
virtual void	changeToAllVertexCentered ()
virtual void	changeToAllCellCentered ()
virtual void	consistencyCheck () const
void	displayDistribution (const aString &label, FILE *file=stdout)
int	numberOfGridPoints () const
Interpolant *	getInterpolant () const
virtual Integer	get (const GenericDataBase &db, const aString &name)
virtual Integer	put (GenericDataBase &db, const aString &name, int geometryToPut=-1) const
void	updateReferences (const Integer what=EVERYTHING)
Integer	update (const Integer what=THEusualSuspects, const Integer how=COMPUTEtheUsual)
Integer	update (GridCollection &x, const Integer what=THEusualSuspects, const Integer how=COMPUTEtheUsual)
ListOfParentChildSiblingInfo *	getParentChildSiblingInfo () const
	return the ListOfParentChildSiblingInfo.
virtual void	updateParentChildSiblingInfo ()
	Update the ListOfParentChildSiblingInfo.
void	parentChildSiblingInfoNeedsUpdate ()
virtual void	destroy (const Integer what=NOTHING)
virtual int	add (MappedGrid &g)
virtual int	add (Mapping &map)
virtual int	deleteGrid (Integer k)
virtual int	deleteGrid (const IntegerArray &gridsToDelete)
virtual int	deleteGrid (const IntegerArray &gridsToDelete, const IntegerArray &gridsToSave)
virtual Integer	addRefinement (const IntegerArray &range, const IntegerArray &factor, const Integer &level, const Integer k=0)
	Add a refinement grid to the collection.
Integer	addRefinement (const IntegerArray &range, const Integer &factor, const Integer &level, const Integer k=0)
virtual Integer	replaceRefinementLevels (int level0, int numberOfRefinementLevels0, IntegerArray **gridInfo)
	Replace refinement levels "level0" and higher.
virtual void	deleteRefinement (const Integer &k)
virtual void	deleteRefinementLevels (const Integer level=0)
void	referenceRefinementLevels (GridCollection &x, const Integer level=INTEGER_MAX)
virtual Integer	addMultigridCoarsening (const IntegerArray &factor, const Integer &level, const Integer k=0)
virtual void	deleteMultigridCoarsening (const Integer &k)
virtual void	deleteMultigridLevels (const Integer level=0)
virtual void	addToDomain (int domain, const IntegerArray &gridList)
virtual void	setNumberOfGrids (const Integer &numberOfGrids_)
virtual void	setNumberOfDimensions (const Integer &numberOfDimensions_)
virtual void	setNumberOfDimensionsAndGrids (const Integer &numberOfDimensions_, const Integer &numberOfGrids_)
virtual real	sizeOf (FILE *file=NULL, bool returnSizeOfReference=false) const
int	setMaskAtRefinements ()
void	specifyProcesses (const Range &range)
virtual void	initialize (const Integer &numberOfDimensions_, const Integer &numberOfGrids_)
GridCollection &	masterGridCollection ()
GridCollectionData *	operator-> ()
const GridCollectionData *	operator-> () const
GridCollectionData &	operator* ()
const GridCollectionData &	operator* () const
virtual aString	getClassName () const
Public Member Functions inherited from GenericGridCollection
const Integer &	computedGeometry () const
const Integer &	numberOfGrids () const
const Integer &	numberOfBaseGrids () const
const Integer &	numberOfRefinementLevels () const
const Integer &	numberOfComponentGrids () const
const Integer &	numberOfMultigridLevels () const
const Integer &	numberOfDomains () const
	GenericGridCollection (const Integer numberOfGrids_=0)
	GenericGridCollection (const GenericGridCollection &x, const CopyType ct=DEEP)
virtual	~GenericGridCollection ()
GenericGridCollection &	operator= (const GenericGridCollection &x)
GenericGrid &	operator[] (const Integer &i)
const GenericGrid &	operator[] (const Integer &i) const
void	reference (const GenericGridCollection &x)
void	reference (GenericGridCollectionData &x)
const aString &	getDomainName (int domain) const
void	setDomainName (int domain, const aString &name)
void	setLoadBalancer (LoadBalancer &loadBalancer)
void	updateReferences (const Integer what=EVERYTHING)
Integer	update (const Integer what=THEusualSuspects, const Integer how=COMPUTEtheUsual)
void	geometryHasChanged (const Integer what=~NOTHING)
void	keepGridDistributionOnCopy (const bool trueOrFalse=true)
Logical	operator== (const GenericGridCollection &x) const
Logical	operator!= (const GenericGridCollection &x) const
Integer	getIndex (const GenericGrid &x) const
GenericGridCollection &	masterGridCollection ()
GenericGridCollectionData *	operator-> ()
const GenericGridCollectionData *	operator-> () const
GenericGridCollectionData &	operator* ()
const GenericGridCollectionData &	operator* () const
Public Member Functions inherited from ReferenceCounting
	ReferenceCounting ()
	ReferenceCounting (const ReferenceCounting &x, const CopyType ct=DEEP)
virtual	~ReferenceCounting ()
Integer	incrementReferenceCount ()
Integer	decrementReferenceCount ()
Integer	getReferenceCount () const
Logical	uncountedReferencesMayExist ()
Integer	getGlobalID () const
void	setGlobalID (int id)

Public Attributes
const RealArray	boundingBox
const IntegerArray	refinementFactor
const IntegerArray	multigridCoarseningFactor
IntegerArray *	nodeNumbering
ListOfMappedGrid	grid
ListOfGridCollection	baseGrid
ListOfGridCollection	refinementLevel
ListOfGridCollection	componentGrid
ListOfGridCollection	multigridLevel
ListOfGridCollection	domain
AMR_RefinementLevelInfo *	refinementLevelInfo
RCData *	rcData
Logical	isCounted
Public Attributes inherited from GenericGridCollection
ListOfGenericGrid	grid
const IntegerArray	gridNumber
ListOfGenericGridCollection	baseGrid
const IntegerArray	baseGridNumber
ListOfGenericGridCollection	refinementLevel
const IntegerArray	refinementLevelNumber
ListOfGenericGridCollection	componentGrid
const IntegerArray	componentGridNumber
ListOfGenericGridCollection	multigridLevel
const IntegerArray	multigridLevelNumber
ListOfGenericGridCollection	domain
const IntegerArray	domainNumber
RCData *	rcData
Logical	isCounted

Protected Member Functions
virtual Integer	addRefinement (const Integer &level, const Integer k=0)
virtual Integer	addMultigridCoarsening (const Integer &level, const Integer k=0)
virtual void	initialize (const Integer &numberOfGrids_)

Protected Attributes
GridCollection *	master
Protected Attributes inherited from GenericGridCollection
GenericGridCollection *	master

Member Typedef Documentation

typedef GridCollectionData GridCollection::RCData

Member Enumeration Documentation

anonymous enum

Enumerator
THEmask
THEinverseVertexDerivative
THEinverseCenterDerivative
THEvertex
THEcenter
THEcorner
THEvertexDerivative
THEcenterDerivative
THEvertexJacobian
THEcenterJacobian
THEcellVolume
THEcenterNormal
THEcenterArea
THEfaceNormal
THEfaceArea
THEvertexBoundaryNormal
THEcenterBoundaryNormal
THEcenterBoundaryTangent
THEboundingBox
THEusualSuspects
EVERYTHING

anonymous enum

Enumerator
USEdifferenceApproximation
COMPUTEgeometry
COMPUTEgeometryAsNeeded
COMPUTEtheUsual

anonymous enum

Enumerator
ISinterpolationPoint
ISdiscretizationPoint
ISghostPoint
ISinteriorBoundaryPoint
USESbackupRules
IShiddenByRefinement
ISreservedBit2
ISreservedBit1
ISreservedBit0
GRIDnumberBits
ISusedPoint

Constructor & Destructor Documentation

GridCollection::GridCollection	(	const Integer	numberOfDimensions_ = 0,
		const Integer	numberOfGrids_ = 0
	)

References ReferenceCounting::incrementReferenceCount(), isCounted, LogicalTrue, master, NULL, rcData, refinementLevelInfo, and updateReferences().

GridCollection::GridCollection	(	const GridCollection &	x,
		const CopyType	ct = DEEP
	)

References DEEP, ReferenceCounting::incrementReferenceCount(), isCounted, LogicalTrue, master, NOCOPY, rcData, refinementLevelInfo, SHALLOW, and updateReferences().

GridCollection::~GridCollection ( )

virtual

References ReferenceCounting::decrementReferenceCount(), isCounted, and rcData.

Member Function Documentation

int GridCollection::add ( MappedGrid &  g )

virtual

Reimplemented in CompositeGrid.

References assert, max(), NULL, MappedGrid::numberOfDimensions(), and updateReferences().

Referenced by add(), CompositeGrid::add(), Regrid::buildGrids(), and Regrid::regridRotated().

int GridCollection::add ( Mapping &  map )

virtual

Reimplemented in CompositeGrid.

References add(), End, MappedGrid::getGridType(), MappedGrid::numberOfDimensions(), MappedGrid::numberOfGhostPoints(), GenericGridCollection::numberOfGrids(), MappedGrid::setNumberOfGhostPoints(), Start, and GenericGrid::unstructuredGrid.

Integer GridCollection::addMultigridCoarsening ( const IntegerArray &  factor, const Integer &  level, const Integer  k = 0  )

virtual

Reimplemented in CompositeGrid.

References updateReferences().

Referenced by CompositeGrid::addMultigridCoarsening().

virtual Integer GridCollection::addMultigridCoarsening ( const Integer &  level, const Integer  k = 0  )

inlineprotectedvirtual

Reimplemented from GenericGridCollection.

Reimplemented in CompositeGrid.

Integer GridCollection::addRefinement ( const IntegerArray &  range, const IntegerArray &  factor, const Integer &  level, const Integer  k = 0  )

virtual

Add a refinement grid to the collection.

Reimplemented in CompositeGrid.

References updateReferences().

Referenced by addRefinement(), CompositeGrid::addRefinement(), Regrid::buildGrids(), and main().

Integer GridCollection::addRefinement ( const IntegerArray &  range, const Integer &  factor, const Integer &  level, const Integer  k = 0  )

inline

References addRefinement().

virtual Integer GridCollection::addRefinement ( const Integer &  level, const Integer  k = 0  )

inlineprotectedvirtual

Reimplemented from GenericGridCollection.

Reimplemented in CompositeGrid.

void GridCollection::addToDomain ( int  domain, const IntegerArray &  gridList  )

virtual

References GenericGridCollection::domainNumber, GenericGridCollection::numberOfGrids(), and printF().

void GridCollection::breakReference ( void  )

virtual

Reimplemented from GenericGridCollection.

Reimplemented in CompositeGrid.

References ReferenceCounting::decrementReferenceCount(), isCounted, rcData, reference(), and x.

void GridCollection::changeToAllCellCentered ( )

virtual

Reimplemented in CompositeGrid.

References grid, and GenericGridCollection::numberOfGrids().

Referenced by CompositeGrid::changeToAllCellCentered().

void GridCollection::changeToAllVertexCentered ( )

virtual

Reimplemented in CompositeGrid.

References grid, and GenericGridCollection::numberOfGrids().

Referenced by CompositeGrid::changeToAllVertexCentered().

void GridCollection::consistencyCheck ( void  ) const

virtual

Reimplemented from GenericGridCollection.

Reimplemented in CompositeGrid.

References assert, baseGrid, componentGrid, ReferenceCounting::consistencyCheck(), GenericGridCollection::consistencyCheck(), domain, getClassName(), ReferenceCounting::getGlobalID(), grid, multigridCoarseningFactor, multigridLevel, GenericGridCollection::rcData, rcData, refinementFactor, and refinementLevel.

Referenced by CompositeGrid::consistencyCheck().

int GridCollection::deleteGrid ( Integer  k )

virtual

Reimplemented in CompositeGrid.

Referenced by deleteGrid(), and CompositeGrid::deleteGrid().

int GridCollection::deleteGrid ( const IntegerArray &  gridsToDelete )

virtual

Reimplemented in CompositeGrid.

References Overture::abort(), deleteGrid(), display(), ia, max(), min(), and GenericGridCollection::numberOfGrids().

int GridCollection::deleteGrid ( const IntegerArray &  gridsToDelete, const IntegerArray &  gridsToSave  )

virtual

Reimplemented in CompositeGrid.

References assert, GenericGridCollection::baseGridNumber, GenericGridCollection::componentGridNumber, GenericGridCollection::computedGeometry(), ListOfMappedGrid::deleteElement(), GenericGridCollection::domainNumber, grid, max(), GenericGridCollection::multigridLevelNumber, GenericGridCollection::numberOfBaseGrids(), GenericGridCollection::numberOfComponentGrids(), GenericGridCollection::numberOfDomains(), GenericGridCollection::numberOfGrids(), GenericGridCollection::numberOfMultigridLevels(), GenericGridCollection::numberOfRefinementLevels(), R, GenericGridCollection::refinementLevelNumber, setNumberOfGrids(), and GenericGridCollection::THElists.

void GridCollection::deleteMultigridCoarsening ( const Integer &  k )

virtual

Reimplemented from GenericGridCollection.

Reimplemented in CompositeGrid.

References updateReferences().

void GridCollection::deleteMultigridLevels ( const Integer  level = 0 )

virtual

Reimplemented from GenericGridCollection.

Reimplemented in CompositeGrid.

References updateReferences().

void GridCollection::deleteRefinement ( const Integer &  k )

virtual

Reimplemented from GenericGridCollection.

Reimplemented in CompositeGrid.

References updateReferences().

Referenced by Regrid::buildGrids(), and Regrid::regridRotated().

void GridCollection::deleteRefinementLevels ( const Integer  level = 0 )

virtual

Reimplemented from GenericGridCollection.

Reimplemented in CompositeGrid.

References updateReferences().

void GridCollection::destroy ( const Integer  what = NOTHING )

virtual

Reimplemented from GenericGridCollection.

Reimplemented in CompositeGrid.

References updateReferences().

void GridCollection::displayDistribution	(	const aString &	label,
		FILE *	file = stdout
	)

References MappedGrid::getPartition(), grid, GenericGridCollectionData::gridDistributionList, max(), min(), GenericGridCollection::numberOfComponentGrids(), numberOfDimensions(), and GenericGridCollection::numberOfGrids().

Referenced by Ogen::buildACompositeGrid(), Ogmg::buildExtraLevelsNew(), CompositeGrid::get(), and main().

Integer GridCollection::get ( const GenericDataBase &  db, const aString &  name  )

virtual

Reimplemented from GenericGridCollection.

Reimplemented in CompositeGrid.

References GridCollectionData::get(), rcData, and updateReferences().

Referenced by ShowFileReader::getAGrid().

virtual aString GridCollection::getClassName ( void  ) const

inlinevirtual

Reimplemented from GenericGridCollection.

Reimplemented in CompositeGrid.

Referenced by consistencyCheck(), PlotIt::grid3d(), outputRefinementInfo(), outputRefinementInfoNew(), PlotIt::plot(), PlotIt::plotGrid(), PlotIt::plotGrid2d(), GridStatistics::printGridStatistics(), Ogshow::saveSolution(), floatCompositeGridFunction::updateToMatchGrid(), doubleCompositeGridFunction::updateToMatchGrid(), intCompositeGridFunction::updateToMatchGrid(), intCompositeGridFunction::updateToMatchNumberOfGrids(), doubleCompositeGridFunction::updateToMatchNumberOfGrids(), and floatCompositeGridFunction::updateToMatchNumberOfGrids().

Interpolant* GridCollection::getInterpolant ( ) const

inline

References GridCollectionData::interpolant, and rcData.

ListOfParentChildSiblingInfo * GridCollection::getParentChildSiblingInfo

(

)

const

return the ListOfParentChildSiblingInfo.

Referenced by InterpolateRefinements::interpolateRefinementBoundaries(), and main().

void GridCollection::initialize ( const Integer &  numberOfDimensions_, const Integer &  numberOfGrids_  )

virtual

Reimplemented in CompositeGrid.

References GenericGridCollection::initialize().

Referenced by CompositeGrid::initialize().

virtual void GridCollection::initialize ( const Integer &  numberOfGrids_ )

inlineprotectedvirtual

Reimplemented from GenericGridCollection.

Reimplemented in CompositeGrid.

GridCollection & GridCollection::masterGridCollection

(

)

References assert, and master.

Integer& GridCollection::numberOfDimensions ( )

inline

References GridCollectionData::numberOfDimensions, and rcData.

Referenced by Ogen::adjustBoundary(), Ogen::adjustBoundarySerial(), Ogen::adjustForNearbyBoundaries(), Ogmg::alternatingLineSmooth(), Ogmg::applyFinalConditions(), Ogmg::applyInitialConditions(), Ogmg::assignBoundaryConditionCoefficients(), Ogmg::averageCoefficients(), Ogmg::bcTest(), InterpolateRefinements::boxWasAdjustedInPeriodicDirection(), Integrate::buildAdaptiveMeshRefinementSurfaceWeights(), Ogmg::buildCoefficientArrays(), Ogen::buildCutout(), Ogmg::buildExtraLevels(), Ogmg::buildExtraLevelsNew(), UnstructuredMapping::buildFromACompositeGrid(), Regrid::buildGrids(), Ugen::buildHybridInterfaceMappings(), Ugen::buildHybridVertexMappings(), InterpolatePoints::buildInterpolationInfo(), InterpolatePointsOnAGrid::buildInterpolationInfo(), Ogmg::buildPredefinedCoefficientMatrix(), Ogmg::buildPredefinedEquations(), Ogmg::buildPredefinedVariableCoefficients(), CanInterpolate::canInterpolate(), CanInterpolate::canInterpolateOld(), CompositeGrid::changeInterpolationWidth(), Ogen::changeParameters(), Ogen::checkBoundaryAdjustment(), Ogen::checkCanInterpolate(), Ogen::checkCrossings(), checkError(), ExposedPoints::checkForBetterQualityInterpolation(), Ogmg::checkForBetterQualityInterpolation(), Ogen::checkForBoundaryAdjustments(), Ogen::checkForOrphanPointsOnBoundaries(), checkGrid(), Ogen::checkHoleCutting(), Ogen::checkInterpolationOnBoundaries(), checkOverlappingGrid(), Ogen::checkParallelGhostWidth(), Ogen::checkRefinementInterpolation(), Ogen::checkRefinementInterpolationNew(), OgmgParameters::chooseGoodMultigridParameters(), Ogen::classifyPoints(), Ogmg::coarseGridSolverTest(), Ogmg::coarseToFineTest(), collectInterpolationData(), DerivedFunctions::computeDerivedFunctions(), ErrorEstimator::computeErrorFunction(), ErrorEstimator::computeFunction(), Ogen::computeInterpolationQuality(), Ogen::computeInterpolationStencil(), Integrate::computeLeftNullVector(), Ogmg::computeLeftNullVector(), Integrate::computeStitchedSurfaceWeights(), Integrate::computeStitchedSurfaceWeightsOld(), Integrate::computeSurfaceWeights(), Integrate::computeWeights(), Ugen::computeZoneMasks(), PlotIt::contour(), PlotIt::contour2d(), PlotIt::contour3d(), PlotIt::contourCuts(), PlotIt::contourOpt2d(), Ogen::countCrossingsWithRealBoundary(), Ogen::cutHoles(), Ogen::cutHolesNew(), Ogen::cutHolesNewer(), Ogmg::cycle(), Integrate::defineSurfacesAndComputeWeights(), Ogen::determineBoundaryPointsToAdjust(), Ogen::determineMinimalIndexRange(), Ogen::displayCompositeGridParameters(), displayDistribution(), displayValuesAtAPoint(), dudt(), SurfaceStitcher::enlargeGapWidth(), Ugen::enlargeHole(), Ogen::explicitHoleCutting(), fileOutput(), Ogen::findBestGuess(), InterpolatePointsOnAGrid::findNearestValidGridPoint(), findNearestValidGridPoint(), Ogen::findTrueBoundary(), Ogmg::fineToCoarseTest(), Oges::formRhsAndSolutionVectors(), Ogmg::fullMultigrid(), Ugen::generateInitialFaceList(), Ogen::generateInterpolationArrays(), Ugen::generateSpacingControlMesh(), Ogen::getAdjustmentVectors(), PlotIt::getBounds(), PlotIt::getGridBounds(), PlotIt::getGridColour(), GenericCompositeGridOperators::getInterpolationCoefficients(), Ogmg::getInterpolationCoordinates(), Ogmg::getInterpolationCoordinatesNew(), Ogmg::getInterpolationCoordinatesNewOld(), ExposedPoints::getInterpolationStencil(), Ogmg::getInterpolationStencil(), ParallelGridUtility::getLocalInterpolationData(), ParentChildSiblingInfo::getParentGhostBoxes(), ParentChildSiblingInfo::getSiblingGhostBoxes(), getTimeStep(), getTrueSolution(), DerivedFunctions::getUserDefinedDerivedFunction(), PlotIt::grid3d(), Ogen::improveQuality(), ExposedPoints::initialize(), Ogmg::initializeConstantCoefficients(), Ugen::initializeGeneration(), ExposedPoints::interpolate(), Interpolant::interpolate(), Ogmg::interpolate(), Ogen::interpolateAll(), InterpolatePointsOnAGrid::interpolateAllPoints(), interpolateAllPoints(), Ogen::interpolateAPoint(), InterpolateRefinements::interpolateCoarseFromFine(), interpolateExposedPoints(), Ogen::interpolateMixedBoundary(), InterpolatePoints::interpolatePoints(), interpolatePoints(), InterpolatePointsOnAGrid::interpolatePoints(), Ogen::interpolatePoints(), ExposedPoints::interpolatePoints(), InterpolateRefinements::interpolateRefinementBoundaries(), InterpolateRefinements::interpolateRefinements(), interpolateRefinements(), InterpolatePoints::interpolationCoefficients(), Ogen::isNeededForMultigridRestriction(), Ogen::lastChanceInterpolation(), main(), Ogen::markPointsNeededForInterpolation(), Ogen::markPointsNeededForInterpolationNew(), Ogen::markPointsReallyNeededForInterpolation(), Ogen::movingUpdate(), Ogen::movingUpdateNew(), CompositeGrid::numberOfPossibleMultigridLevels(), ogen(), operator<<(), Ogmg::operatorAveraging(), outputRefinementInfo(), outputRefinementInfoNew(), InterpolatePointsOnAGrid::parallelSetup(), PlotIt::plot(), Ogen::plot(), plot3dToOverture(), ErrorEstimator::plotErrorPoints(), BodyForce::plotForcingRegions(), PlotIt::plotGrid(), PlotIt::plotGrid2d(), PlotIt::plotGridBoundaries(), PlotIt::plotGridQuality(), Ogen::preInterpolateGrids(), Ogen::printOrphanPoints(), Oges::privateUpdateToMatchGrid(), Ogen::projectToBoundary(), Ogen::queryAPoint(), readMappingsFromAnOverlappingGridFile(), ParallelGridUtility::redistribute(), Regrid::regrid(), Regrid::regridAligned(), Regrid::regridRotated(), Ogen::removeExteriorPoints(), Ogen::removeExteriorPointsNew(), residual(), FileOutput::save(), saveOvertureTextFile(), Ugen::sealHoles(), Ugen::sealHoles3D(), Oges::setEquationAndBoundaryConditions(), Ogen::setGridParameters(), CompositeGrid::setHybridConnectivity(), setMaskAtRefinements(), CompositeGrid::setOverlapParameters(), ParallelOverlappingGridInterpolator::setup(), Ogmg::setup(), GenericGridCollectionOperators::setup(), GenericCompositeGridOperators::setup(), ErrorEstimator::smooth(), Ogmg::smoothTest(), CompositeGrid::sortInterpolationPoints(), PlotIt::streamLines(), PlotIt::streamLines2d(), PlotIt::streamLines3d(), Integrate::surfaceIntegral(), Ogen::sweepOutHolePoints(), Interpolant::testInterpolation(), CanInterpolate::transferInterpDataForAMR(), Ogen::unmarkBoundaryInterpolationPoints(), Ogen::unmarkInterpolationPoints(), FileOutput::update(), OgmgParameters::update(), Ogen::updateBoundaryAdjustment(), Ogen::updateCanInterpolate(), Ogen::updateGeometry(), Ugen::updateHybrid(), Ogen::updateOverlap(), Ogen::updateParameters(), Ogen::updateRefinement(), Ogen::updateRefinementFillInterpolationData(), Ogen::updateRefinementFillInterpolationDataNew(), Ogen::updateRefinementNew(), Ogen::updateRefinementNewer(), Interpolant::updateToMatchGrid(), Integrate::updateToMatchGrid(), Integrate::useAdaptiveMeshRefinementGrids(), PlotIt::userDefinedOutput(), DataFormats::writePlot3d(), xInterpolate(), and xInterpolateOpt().

const Integer& GridCollection::numberOfDimensions ( ) const

inline

References GridCollectionData::numberOfDimensions, and rcData.

int GridCollection::numberOfGridPoints

(

)

const

References MappedGrid::dimension(), grid, and GenericGridCollection::numberOfComponentGrids().

Referenced by main().

GridCollectionData& GridCollection::operator* ( )

inline

References rcData.

const GridCollectionData& GridCollection::operator* ( ) const

inline

References rcData.

GridCollectionData* GridCollection::operator-> ( )

inline

References rcData.

const GridCollectionData* GridCollection::operator-> ( ) const

inline

References rcData.

GridCollection & GridCollection::operator=

(

const GridCollection &

x

)

References GenericGridCollectionData::computedGeometry, GridCollectionData::getClassName(), master, rcData, reference(), refinementLevelInfo, GenericGridCollection::THEbaseGrid, GenericGridCollection::THEcomponentGrid, GenericGridCollection::THEdomain, GenericGridCollection::THEmultigridLevel, GenericGridCollection::THErefinementLevel, GridCollectionData::update(), updateParentChildSiblingInfo(), and updateReferences().

MappedGrid& GridCollection::operator[] ( const Integer &  i )

inline

References grid.

const MappedGrid& GridCollection::operator[] ( const Integer &  i ) const

inline

References grid.

void GridCollection::parentChildSiblingInfoNeedsUpdate

(

)

Call this function when the GridCollection has changed and the parent child sibling info needs to be updated.

Integer GridCollection::put ( GenericDataBase &  db, const aString &  name, int  geometryToPut = -1  ) const

virtual

Reimplemented from GenericGridCollection.

Reimplemented in CompositeGrid.

Referenced by Ogshow::saveSolution().

void GridCollection::reference

(

const GridCollection &

x

)

References ReferenceCounting::decrementReferenceCount(), ReferenceCounting::incrementReferenceCount(), isCounted, master, rcData, GenericGridCollection::reference(), refinementLevelInfo, and updateReferences().

Referenced by breakReference(), PlotIt::contour(), main(), operator=(), PlotIt::plot(), PlotIt::plotGridQuality(), ParallelGridUtility::redistribute(), CompositeGrid::reference(), PlotIt::streamLines(), CompositeGrid::updateReferences(), and GenericGridCollectionOperators::updateToMatchGrid().

void GridCollection::reference

(

GridCollectionData &

x

)

References ReferenceCounting::decrementReferenceCount(), ReferenceCounting::incrementReferenceCount(), isCounted, rcData, GenericGridCollection::reference(), ReferenceCounting::uncountedReferencesMayExist(), and updateReferences().

void GridCollection::referenceRefinementLevels ( GridCollection &  x, const Integer  level = INTEGER_MAX  )

inline

References referenceRefinementLevels().

Referenced by referenceRefinementLevels().

Integer GridCollection::replaceRefinementLevels ( int  level0, int  numberOfRefinementLevels0, IntegerArray **  gridInfo  )

virtual

Replace refinement levels "level0" and higher.

This function is used by the AMR Regrid class in order to efficiently replace a collection of refinement grids. This function avoids the overhead of calling addRefinement and deleteRefinement many times.

Parameters

level0,numberOfRefinementLevels0

: replace and/or add levels level0,..,numberOfRefinementLevels0-1

gridInfo[bg][lev](0:ni-1,0:ng-1)

: info defining a new refinement grid on base grid bg and refinement level=level0+lev, lev=0,1,.... If we let IntegerArray & info = gridInfo[bg][lev] then the number of new refinement grids is given by info.getLength(1). The first 6 entries in info define the range(0:1,0:2) of the refinement grid and the next three entries define the refinement factors along each axis, info(0,g) = range(0,0) info(1,g) = range(1,0) info(2,g) = range(0,1) info(3,g) = range(1,1) info(4,g) = range(0,2) info(5,g) = range(1,2) info(6,g) = factor(0) info(7,g) = factor(1) info(8,g) = factor(2)

Reimplemented in CompositeGrid.

References updateReferences().

Referenced by Regrid::regridAligned().

int GridCollection::setMaskAtRefinements

(

)

References assert, GenericGridCollection::baseGridNumber, MappedGrid::boundaryCondition(), GenericGridCollectionData::computedGeometry, End, floorDiv(), ParallelUtility::getLocalArrayBounds(), getLocalArrayWithGhostBoundaries(), MappedGrid::gridIndexRange(), GenericGridCollection::gridNumber, IShiddenByRefinement, MappedGrid::IShiddenByRefinement, mask, MappedGrid::mask(), GenericGridCollection::numberOfBaseGrids(), GenericGridCollection::numberOfComponentGrids(), numberOfDimensions(), MappedGrid::numberOfDimensions(), GenericGridCollection::numberOfRefinementLevels(), refinementFactor, refinementLevel, Start, MappedGrid::THEmask, and update().

Referenced by main(), Ogen::updateRefinement(), Ogen::updateRefinementNew(), and Ogen::updateRefinementNewer().

void GridCollection::setNumberOfDimensions ( const Integer &  numberOfDimensions_ )

virtual

Reimplemented in CompositeGrid.

References updateReferences().

void GridCollection::setNumberOfDimensionsAndGrids ( const Integer &  numberOfDimensions_, const Integer &  numberOfGrids_  )

virtual

Reimplemented in CompositeGrid.

References updateReferences().

Referenced by ParallelGridUtility::redistribute().

void GridCollection::setNumberOfGrids ( const Integer &  numberOfGrids_ )

virtual

Reimplemented from GenericGridCollection.

Reimplemented in CompositeGrid.

References updateReferences().

Referenced by Regrid::buildGrids(), and deleteGrid().

real GridCollection::sizeOf ( FILE *  file = NULL, bool  returnSizeOfReference = false  ) const

virtual

Reimplemented in CompositeGrid.

References assert, boundingBox, and NULL.

Referenced by CompositeGrid::sizeOf().

void GridCollection::specifyProcesses

(

const Range &

range

)

References assert, GenericGridCollectionData::gridDistributionList, NULL, GenericGridCollection::numberOfGrids(), and rcData.

Referenced by ParallelGridUtility::redistribute(), and CompositeGrid::specifyProcesses().

Integer GridCollection::update ( const Integer  what = THEusualSuspects, const Integer  how = COMPUTEtheUsual  )

inline

References update().

Referenced by Regrid::buildGrids(), ErrorEstimator::computeFunction(), PlotIt::contour(), PlotIt::contour1d(), PlotIt::displacement(), main(), PlotIt::plot(), PlotIt::plotGrid(), PlotIt::plotGridQuality(), Regrid::regridAligned(), Regrid::regridRotated(), setMaskAtRefinements(), PlotIt::streamLines(), and update().

Integer GridCollection::update ( GridCollection &  x, const Integer  what = THEusualSuspects, const Integer  how = COMPUTEtheUsual  )

inline

References update().

Referenced by update().

void GridCollection::updateParentChildSiblingInfo ( )

virtual

Update the ListOfParentChildSiblingInfo.

Referenced by InterpolateRefinements::interpolateRefinementBoundaries(), main(), and operator=().

void GridCollection::updateReferences

(

const Integer

what = EVERYTHING

)

References baseGrid, boundingBox, componentGrid, domain, FOR_COLLECTION, GenericGridCollection::grid, grid, multigridCoarseningFactor, multigridLevel, GenericGridCollection::numberOfGrids(), rcData, REF_ARRAY, ListOfGenericGrid::reference(), GenericGridCollection::reference(), REFERENCE, refinementFactor, refinementLevel, and GenericGridCollection::updateReferences().

Referenced by add(), addMultigridCoarsening(), addRefinement(), deleteMultigridCoarsening(), deleteMultigridLevels(), deleteRefinement(), deleteRefinementLevels(), destroy(), get(), GridCollection(), main(), operator=(), ParallelGridUtility::redistribute(), reference(), replaceRefinementLevels(), setNumberOfDimensions(), setNumberOfDimensionsAndGrids(), setNumberOfGrids(), and CompositeGrid::updateReferences().

Member Data Documentation

ListOfGridCollection GridCollection::baseGrid

Referenced by consistencyCheck(), and updateReferences().

const RealArray GridCollection::boundingBox

Referenced by ExposedPoints::initialize(), Ogen::interpolateAll(), operator<<(), Ogen::preInterpolateGrids(), and updateReferences().

ListOfGridCollection GridCollection::componentGrid

Referenced by consistencyCheck(), and updateReferences().

ListOfGridCollection GridCollection::domain

Referenced by consistencyCheck(), and updateReferences().

ListOfMappedGrid GridCollection::grid

Referenced by changeToAllCellCentered(), CompositeGrid::changeToAllCellCentered(), changeToAllVertexCentered(), CompositeGrid::changeToAllVertexCentered(), consistencyCheck(), deleteGrid(), displayDistribution(), numberOfGridPoints(), CompositeGrid::numberOfPossibleMultigridLevels(), operator[](), CompositeGrid::setHybridConnectivity(), CompositeGrid::sortInterpolationPoints(), and updateReferences().

Logical GridCollection::isCounted

Referenced by breakReference(), GridCollection(), reference(), and ~GridCollection().

GridCollection* GridCollection::master

protected

Referenced by GridCollection(), masterGridCollection(), operator=(), and reference().

const IntegerArray GridCollection::multigridCoarseningFactor

Referenced by consistencyCheck(), operator<<(), and updateReferences().

ListOfGridCollection GridCollection::multigridLevel

Referenced by consistencyCheck(), PlotIt::plotGrid(), PlotIt::plotGrid2d(), floatCompositeGridFunction::setIsACoefficientMatrix(), doubleCompositeGridFunction::setIsACoefficientMatrix(), intCompositeGridFunction::setIsACoefficientMatrix(), doubleGridCollectionFunction::setIsACoefficientMatrix(), floatGridCollectionFunction::setIsACoefficientMatrix(), intGridCollectionFunction::setIsACoefficientMatrix(), intGridCollectionFunction::setOperators(), floatGridCollectionFunction::setOperators(), doubleGridCollectionFunction::setOperators(), floatGridCollectionFunction::updateCollections(), intGridCollectionFunction::updateCollections(), doubleGridCollectionFunction::updateCollections(), and updateReferences().

IntegerArray* GridCollection::nodeNumbering

RCData* GridCollection::rcData

Referenced by breakReference(), consistencyCheck(), CompositeGrid::consistencyCheck(), doubleGridCollectionFunction::doubleGridCollectionFunction(), floatGridCollectionFunction::floatGridCollectionFunction(), get(), getInterpolant(), GridCollection(), intGridCollectionFunction::intGridCollectionFunction(), numberOfDimensions(), operator*(), operator->(), operator=(), ParallelGridUtility::redistribute(), reference(), Regrid::regrid(), specifyProcesses(), updateReferences(), intGridCollectionFunction::updateToMatchGrid(), floatGridCollectionFunction::updateToMatchGrid(), doubleGridCollectionFunction::updateToMatchGrid(), doubleGridCollectionFunction::updateToMatchNumberOfGrids(), floatGridCollectionFunction::updateToMatchNumberOfGrids(), intGridCollectionFunction::updateToMatchNumberOfGrids(), and ~GridCollection().

const IntegerArray GridCollection::refinementFactor

Referenced by ParentChildSiblingInfo::buildParentChildSiblingInfoObjects(), consistencyCheck(), ParentChildSiblingInfo::getParentGhostBoxes(), InterpolateRefinements::interpolateRefinements(), interpolateRefinements(), main(), operator<<(), outputRefinementInfo(), outputRefinementInfoNew(), setMaskAtRefinements(), CanInterpolate::transferInterpDataForAMR(), updateReferences(), Ogen::updateRefinement(), Ogen::updateRefinementFillInterpolationData(), Ogen::updateRefinementFillInterpolationDataNew(), Ogen::updateRefinementNew(), and Ogen::updateRefinementNewer().

ListOfGridCollection GridCollection::refinementLevel

Referenced by Integrate::buildAdaptiveMeshRefinementSurfaceWeights(), Regrid::buildGrids(), ParentChildSiblingInfo::buildParentChildSiblingInfoObjects(), Regrid::buildProperNestingDomains(), Ogen::checkUpdateRefinement(), consistencyCheck(), InterpolateRefinements::interpolateCoarseFromFine(), InterpolateRefinements::interpolateRefinementBoundaries(), Interpolant::interpolateRefinementLevel(), InterpolateRefinements::interpolateRefinements(), interpolateRefinements(), main(), Regrid::outputRefinementInfo(), printInfo(), Regrid::printStatistics(), Regrid::regridAligned(), Regrid::regridRotated(), intCompositeGridFunction::setIsACoefficientMatrix(), floatCompositeGridFunction::setIsACoefficientMatrix(), doubleCompositeGridFunction::setIsACoefficientMatrix(), floatGridCollectionFunction::setIsACoefficientMatrix(), intGridCollectionFunction::setIsACoefficientMatrix(), doubleGridCollectionFunction::setIsACoefficientMatrix(), setMaskAtRefinements(), intCompositeGridFunction::setOperators(), floatCompositeGridFunction::setOperators(), doubleCompositeGridFunction::setOperators(), doubleGridCollectionFunction::setOperators(), floatGridCollectionFunction::setOperators(), intGridCollectionFunction::setOperators(), Interpolant::testInterpolation(), CanInterpolate::transferInterpDataForAMR(), floatCompositeGridFunction::updateCollections(), intCompositeGridFunction::updateCollections(), doubleCompositeGridFunction::updateCollections(), intGridCollectionFunction::updateCollections(), floatGridCollectionFunction::updateCollections(), doubleGridCollectionFunction::updateCollections(), updateReferences(), Ogen::updateRefinement(), Ogen::updateRefinementFillInterpolationData(), Ogen::updateRefinementFillInterpolationDataNew(), Ogen::updateRefinementNew(), and Ogen::updateRefinementNewer().

AMR_RefinementLevelInfo* GridCollection::refinementLevelInfo

Referenced by GridCollection(), operator=(), and reference().

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The documentation for this class was generated from the following files:

• GridCollection.h
• GridCollection.C