HDF_DataBase Class Reference

#include <HDF5_DataBase.h>

Inheritance diagram for HDF_DataBase:

Collaboration diagram for HDF_DataBase:

Public Member Functions
	HDF_DataBase ()
	HDF_DataBase (const HDF_DataBase &)
	HDF_DataBase (const GenericDataBase &)
virtual GenericDataBase *	virtualConstructor () const
	~HDF_DataBase ()
HDF_DataBase &	operator= (const HDF_DataBase &)
GenericDataBase &	operator= (const GenericDataBase &)
int	mount (const aString &fileName, const aString &flags="I")
int	unmount ()
int	flush ()
virtual int	getID () const
virtual int	build (GenericDataBase &db, int id)
int	isNull () const
int	create (GenericDataBase &db, const aString &name, const aString &dirClassName)
int	link (GenericDataBase &db, const HDF_DataBase &parent, const aString &name)
int	find (GenericDataBase &db, const aString &name, const aString &dirClassName="directory") const
int	locate (GenericDataBase &db, const aString &name, const aString &dirClassName="directory") const
virtual int	find (aString *name, const aString &dirClassName, const int &maxNumber, int &actualNumber) const
virtual int	find (GenericDataBase *db, aString *name, const aString &dirClassName, const int &maxNumber, int &actualNumber) const
virtual int	turnOnWarnings ()
virtual int	turnOffWarnings ()
int	put (const float &x, const aString &name)
int	put (const double &x, const aString &name)
int	put (const int &x, const aString &name)
int	put (const aString &x, const aString &name)
int	put (const bool &x, const aString &name)
int	get (float &x, const aString &name) const
int	get (double &x, const aString &name) const
int	get (int &x, const aString &name) const
int	get (aString &x, const aString &name) const
int	get (bool &x, const aString &name) const
virtual int	put (const floatSerialArray &x, const aString &name)
virtual int	put (const doubleSerialArray &x, const aString &name)
virtual int	put (const intSerialArray &x, const aString &name)
virtual int	putDistributed (const floatArray &x, const aString &name)
virtual int	putDistributed (const doubleArray &x, const aString &name)
virtual int	putDistributed (const intArray &x, const aString &name)
virtual int	get (floatSerialArray &x, const aString &name, Index *Iv=NULL) const
virtual int	get (doubleSerialArray &x, const aString &name, Index *Iv=NULL) const
virtual int	get (intSerialArray &x, const aString &name, Index *Iv=NULL) const
virtual int	getDistributed (floatArray &x, const aString &name) const
virtual int	getDistributed (doubleArray &x, const aString &name) const
virtual int	getDistributed (intArray &x, const aString &name) const
int	put (const int x[], const aString &name, const int number)
int	put (const float x[], const aString &name, const int number)
int	put (const double x[], const aString &name, const int number)
int	put (const aString x[], const aString &name, const int number)
int	get (int x[], const aString &name, const int number) const
int	get (float x[], const aString &name, const int number) const
int	get (double x[], const aString &name, const int number) const
int	get (aString x[], const aString &name, const int number) const
void	printStatistics () const
virtual void	setMode (const InputOutputMode &mode=normalMode)
int	putSM (const floatArray &x, const aString &name)
int	getSM (floatArray &x, const aString &name)
Public Member Functions inherited from GenericDataBase
	GenericDataBase ()
	GenericDataBase (const GenericDataBase &)
virtual	~GenericDataBase ()
ReferenceCountingList *	getList () const
virtual InputOutputMode	getMode () const
int	getNumberOfLocalFilesForReading () const
int	getNumberOfLocalFilesForWriting () const

Static Public Attributes
static int	debug = 0

Protected Types
enum	AcessModeEnum { none, write, read }

Protected Member Functions
int	close ()
void	reference (const HDF_DataBase &db)
void	destroy ()
void	closeStream () const
int	closeLocalFile (int p, AcessModeEnum accessMode) const
int	getFileGroup (int p, AcessModeEnum accessMode) const
aString	getSerialArrayName (const aString &fullGroupPath, const aString &name, const int p) const
aString	getSerialFileName (const int p, AcessModeEnum accessMode) const
HDF_DataBase *	openLocalFile (int p, AcessModeEnum accessMode) const

Protected Attributes
enum HDF_DataBase::AcessModeEnum	accessMode
bool	bufferWasCreatedInThisDirectory
int	fileID
aString	fileName
aString	fullGroupPath
int	processorForWriting
DataBaseBuffer *	dataBaseBuffer
HDF_DataBase **	serialDataBase
Protected Attributes inherited from GenericDataBase
InputOutputMode	mode
int	issueWarnings
ReferenceCountingList *	referenceCountingList
int	numberOfLocalFilesForWriting
int	numberOfLocalFilesForReading
int	numberOfProcessorsUsedToWriteFile

Additional Inherited Members
Public Types inherited from GenericDataBase
enum	InputOutputMode {   normalMode =0, streamInputMode, streamOutputMode, noStreamMode,   bufferMode }
enum	ParallelIOModeEnum { independentIO, collectiveIO, multipleFileIO }
Static Public Member Functions inherited from GenericDataBase
static void	setParallelWriteMode (ParallelIOModeEnum mode)
static void	setParallelReadMode (ParallelIOModeEnum mode)
static ParallelIOModeEnum	getParallelWriteMode ()
static ParallelIOModeEnum	getParallelReadMode ()
static int	setMaximumNumberOfFilesForWriting (int maxNumberOfFiles)
Public Attributes inherited from GenericDataBase
aString	className
aString	OvertureVersion
Static Protected Attributes inherited from GenericDataBase
static ParallelIOModeEnum	parallelReadMode =GenericDataBase::multipleFileIO
static ParallelIOModeEnum	parallelWriteMode =GenericDataBase::multipleFileIO
static int	maximumNumberOfLocalFilesForWriting =128

Member Enumeration Documentation

enum HDF_DataBase::AcessModeEnum

protected

Enumerator
none
write
read

Constructor & Destructor Documentation

HDF_DataBase::HDF_DataBase

(

)

References accessMode, bufferWasCreatedInThisDirectory, dataBaseBuffer, fileID, fileName, fullGroupPath, GenericDataBase::mode, none, GenericDataBase::normalMode, NULL, processorForWriting, and serialDataBase.

Referenced by virtualConstructor().

HDF_DataBase::HDF_DataBase

(

const HDF_DataBase &

db

)

HDF_DataBase::HDF_DataBase

(

const GenericDataBase &

db

)

References GenericDataBase::className.

HDF_DataBase::~HDF_DataBase

(

)

References bufferWasCreatedInThisDirectory, closeStream(), dataBaseBuffer, debug, GenericDataBase::mode, GenericDataBase::normalMode, and NULL.

Member Function Documentation

int HDF_DataBase::build ( GenericDataBase &  db, int  id  )

virtual

Reimplemented from GenericDataBase.

int HDF_DataBase::close ( )

protected

Referenced by destroy().

int HDF_DataBase::closeLocalFile ( int  p, AcessModeEnum  accessMode  ) const

protected

References assert, aString, debug, max(), NULL, and Overture::OV_COMM.

Referenced by getDistributed(), and putDistributed().

void HDF_DataBase::closeStream ( ) const

protected

References GenericDataBase::bufferMode, bufferWasCreatedInThisDirectory, DataBaseBuffer::closeBuffer(), dataBaseBuffer, DataBaseBuffer::isOpen(), GenericDataBase::mode, GenericDataBase::normalMode, and NULL.

Referenced by create(), flush(), get(), getDistributed(), link(), put(), putDistributed(), setMode(), unmount(), and ~HDF_DataBase().

int HDF_DataBase::create ( GenericDataBase &  db, const aString &  name, const aString &  dirClassName  )

virtual

Reimplemented from GenericDataBase.

References accessMode, assert, GenericDataBase::className, closeStream(), dataBaseBuffer, fileID, fullGroupPath, GenericDataBase::mode, GenericDataBase::normalMode, GenericDataBase::noStreamMode, NULL, GenericDataBase::streamOutputMode, and write.

void HDF_DataBase::destroy ( )

protected

References close().

int HDF_DataBase::find ( GenericDataBase &  db, const aString &  name, const aString &  dirClassName = "directory"  ) const

virtual

Reimplemented from GenericDataBase.

References fullGroupPath.

Referenced by createMappings(), getFromADataBase(), ShowFileReader::getSequence(), and ShowFileReader::getSequenceNames().

int HDF_DataBase::find ( aString *  name, const aString &  dirClassName, const int &  maxNumber, int &  actualNumber  ) const

virtual

Reimplemented from GenericDataBase.

References assert, and NULL.

int HDF_DataBase::find ( GenericDataBase *  db, aString *  name, const aString &  dirClassName, const int &  maxNumber, int &  actualNumber  ) const

virtual

Reimplemented from GenericDataBase.

References assert, fullGroupPath, and NULL.

int HDF_DataBase::flush ( )

virtual

Reimplemented from GenericDataBase.

References assert, closeStream(), dataBaseBuffer, fileID, fullGroupPath, and NULL.

int HDF_DataBase::get ( float &  x, const aString &  name  ) const

virtual

Reimplemented from GenericDataBase.

References assert, closeStream(), dataBaseBuffer, fileID, fullGroupPath, DataBaseBuffer::getFromBuffer(), GenericDataBase::issueWarnings, max(), GenericDataBase::mode, MPI_Wtime, GenericDataBase::normalMode, GenericDataBase::noStreamMode, NULL, GenericDataBase::streamInputMode, and timeForScalarGet.

Referenced by ShowFileReader::getAGrid(), ShowFileReader::getASolution(), DerivedFunctions::getComponent(), getFromADataBase(), ShowFileReader::getGeneralParameters(), ShowFileReader::getSequence(), ShowFileReader::getSequenceNames(), DerivedFunctions::getUserDefinedDerivedFunction(), main(), ShowFilePlotter::plot(), Ogmg::readLeftNullVector(), and PlotIt::userDefinedOutput().

int HDF_DataBase::get ( double &  x, const aString &  name  ) const

virtual

Reimplemented from GenericDataBase.

References assert, closeStream(), dataBaseBuffer, fileID, fullGroupPath, DataBaseBuffer::getFromBuffer(), GenericDataBase::issueWarnings, max(), GenericDataBase::mode, MPI_Wtime, GenericDataBase::normalMode, GenericDataBase::noStreamMode, NULL, GenericDataBase::streamInputMode, and timeForScalarGet.

int HDF_DataBase::get ( int &  x, const aString &  name  ) const

virtual

Reimplemented from GenericDataBase.

References assert, closeStream(), dataBaseBuffer, fileID, fullGroupPath, DataBaseBuffer::getFromBuffer(), GenericDataBase::issueWarnings, max(), GenericDataBase::mode, MPI_Wtime, GenericDataBase::normalMode, GenericDataBase::noStreamMode, NULL, GenericDataBase::streamInputMode, and timeForScalarGet.

int HDF_DataBase::get ( aString &  x, const aString &  name  ) const

virtual

Reimplemented from GenericDataBase.

References assert, closeStream(), dataBaseBuffer, fileID, fullGroupPath, DataBaseBuffer::getFromBuffer(), GenericDataBase::issueWarnings, GenericDataBase::mode, GenericDataBase::normalMode, GenericDataBase::noStreamMode, NULL, and GenericDataBase::streamInputMode.

int HDF_DataBase::get ( bool &  x, const aString &  name  ) const

virtual

Reimplemented from GenericDataBase.

int HDF_DataBase::get ( floatSerialArray &  x, const aString &  name, Index *  Iv = NULL  ) const

virtual

Reimplemented from GenericDataBase.

References assert, closeStream(), dataBaseBuffer, fileID, fullGroupPath, DataBaseBuffer::getFromBuffer(), GenericDataBase::issueWarnings, max(), min(), GenericDataBase::mode, MPI_Wtime, GenericDataBase::normalMode, GenericDataBase::noStreamMode, NULL, GenericDataBase::streamInputMode, and timeForSerialGetArray.

int HDF_DataBase::get ( doubleSerialArray &  x, const aString &  name, Index *  Iv = NULL  ) const

virtual

Reimplemented from GenericDataBase.

References assert, closeStream(), dataBaseBuffer, fileID, fullGroupPath, DataBaseBuffer::getFromBuffer(), GenericDataBase::issueWarnings, max(), min(), GenericDataBase::mode, MPI_Wtime, GenericDataBase::normalMode, GenericDataBase::noStreamMode, NULL, GenericDataBase::streamInputMode, and timeForSerialGetArray.

int HDF_DataBase::get ( intSerialArray &  x, const aString &  name, Index *  Iv = NULL  ) const

virtual

Reimplemented from GenericDataBase.

References assert, closeStream(), dataBaseBuffer, fileID, fullGroupPath, DataBaseBuffer::getFromBuffer(), GenericDataBase::issueWarnings, max(), min(), GenericDataBase::mode, MPI_Wtime, GenericDataBase::normalMode, GenericDataBase::noStreamMode, NULL, GenericDataBase::streamInputMode, and timeForSerialGetArray.

int HDF_DataBase::get ( int  x[], const aString &  name, const int  number  ) const

virtual

Reimplemented from GenericDataBase.

int HDF_DataBase::get ( float  x[], const aString &  name, const int  number  ) const

virtual

Reimplemented from GenericDataBase.

int HDF_DataBase::get ( double  x[], const aString &  name, const int  number  ) const

virtual

Reimplemented from GenericDataBase.

int HDF_DataBase::get ( aString  x[], const aString &  name, const int  number  ) const

virtual

Reimplemented from GenericDataBase.

References assert, closeStream(), dataBaseBuffer, fileID, fullGroupPath, DataBaseBuffer::getFromBuffer(), GenericDataBase::issueWarnings, GenericDataBase::mode, GenericDataBase::normalMode, GenericDataBase::noStreamMode, NULL, and GenericDataBase::streamInputMode.

int HDF_DataBase::getDistributed ( floatArray &  x, const aString &  name  ) const

virtual

Reimplemented from GenericDataBase.

References Overture::abort(), assert, aString, IndexBox::base(), IndexBox::bound(), closeLocalFile(), closeStream(), dataBaseBuffer, debug, display(), fileID, fullGroupPath, getCPU(), DataBaseBuffer::getDistributedFromBuffer(), CopyArray::getLocalArrayBox(), getLocalArrayWithGhostBoundaries(), getSerialArrayName(), HSIZE_T, GenericDataBase::independentIO, IndexBox::intersect(), GenericDataBase::issueWarnings, max(), MAX_DISTRIBUTED_DIMENSIONS, min(), GenericDataBase::mode, GenericDataBase::multipleFileIO, GenericDataBase::normalMode, GenericDataBase::noStreamMode, nr, NULL, GenericDataBase::numberOfLocalFilesForReading, openLocalFile(), GenericDataBase::parallelReadMode, read, sPrintF(), GenericDataBase::streamInputMode, and timeForParallelGetArray.

Referenced by main().

int HDF_DataBase::getDistributed ( doubleArray &  x, const aString &  name  ) const

virtual

Reimplemented from GenericDataBase.

References Overture::abort(), assert, aString, IndexBox::base(), IndexBox::bound(), closeLocalFile(), closeStream(), dataBaseBuffer, debug, display(), fileID, fullGroupPath, getCPU(), DataBaseBuffer::getDistributedFromBuffer(), CopyArray::getLocalArrayBox(), getLocalArrayWithGhostBoundaries(), getSerialArrayName(), HSIZE_T, GenericDataBase::independentIO, IndexBox::intersect(), GenericDataBase::issueWarnings, max(), MAX_DISTRIBUTED_DIMENSIONS, min(), GenericDataBase::mode, GenericDataBase::multipleFileIO, GenericDataBase::normalMode, GenericDataBase::noStreamMode, nr, NULL, GenericDataBase::numberOfLocalFilesForReading, openLocalFile(), GenericDataBase::parallelReadMode, read, sPrintF(), GenericDataBase::streamInputMode, and timeForParallelGetArray.

int HDF_DataBase::getDistributed ( intArray &  x, const aString &  name  ) const

virtual

Reimplemented from GenericDataBase.

References Overture::abort(), assert, aString, IndexBox::base(), IndexBox::bound(), closeLocalFile(), closeStream(), dataBaseBuffer, debug, display(), fileID, fullGroupPath, getCPU(), DataBaseBuffer::getDistributedFromBuffer(), CopyArray::getLocalArrayBox(), getLocalArrayWithGhostBoundaries(), getSerialArrayName(), HSIZE_T, GenericDataBase::independentIO, IndexBox::intersect(), GenericDataBase::issueWarnings, max(), MAX_DISTRIBUTED_DIMENSIONS, min(), GenericDataBase::mode, GenericDataBase::multipleFileIO, GenericDataBase::normalMode, GenericDataBase::noStreamMode, nr, NULL, GenericDataBase::numberOfLocalFilesForReading, openLocalFile(), GenericDataBase::parallelReadMode, read, sPrintF(), GenericDataBase::streamInputMode, and timeForParallelGetArray.

int HDF_DataBase::getFileGroup ( int  p, AcessModeEnum  accessMode  ) const

protected

References assert.

int HDF_DataBase::getID ( ) const

virtual

Reimplemented from GenericDataBase.

aString HDF_DataBase::getSerialArrayName ( const aString &  fullGroupPath, const aString &  name, const int  p  ) const

protected

References aString, and sPrintF().

Referenced by getDistributed(), and putDistributed().

aString HDF_DataBase::getSerialFileName ( const int  p, AcessModeEnum  accessMode  ) const

protected

References aString, and sPrintF().

int HDF_DataBase::getSM	(	floatArray &	x,
		const aString &	name
	)

int HDF_DataBase::isNull ( ) const

virtual

Reimplemented from GenericDataBase.

References fileID, fullGroupPath, and NULL.

Referenced by ShowFileReader::getFrame().

int HDF_DataBase::link	(	GenericDataBase &	db,
		const HDF_DataBase &	parent,
		const aString &	name
	)

References accessMode, assert, GenericDataBase::className, closeStream(), dataBaseBuffer, fileID, fullGroupPath, GenericDataBase::mode, GenericDataBase::normalMode, GenericDataBase::noStreamMode, NULL, and write.

int HDF_DataBase::locate ( GenericDataBase &  db, const aString &  name, const aString &  dirClassName = "directory"  ) const

virtual

Reimplemented from GenericDataBase.

References assert, debug, fullGroupPath, and NULL.

Referenced by ShowFileReader::getAGrid(), ShowFileReader::getFrame(), ShowFileReader::getSequence(), and ShowFileReader::getSequenceNames().

int HDF_DataBase::mount ( const aString &  fileName, const aString &  flags = "I"  )

virtual

Reimplemented from GenericDataBase.

References Overture::abort(), accessMode, GenericDataBase::collectiveIO, debug, fileID, fileName, fullGroupPath, GenericDataBase::independentIO, GenericDataBase::issueWarnings, max(), MPI_COMM_WORLD, GenericDataBase::multipleFileIO, NULL, GenericDataBase::numberOfLocalFilesForReading, GenericDataBase::numberOfLocalFilesForWriting, GenericDataBase::numberOfProcessorsUsedToWriteFile, OVERTURE_VERSION, GenericDataBase::OvertureVersion, GenericDataBase::parallelReadMode, GenericDataBase::parallelWriteMode, printF(), put(), read, serialDataBase, turnOffWarnings(), turnOnWarnings(), and write.

Referenced by MappingBuilder::build(), createMappings(), getFromADataBase(), ExposedPoints::initialize(), main(), ogen(), outputMovingGrids(), outputRefinementInfo(), outputRefinementInfoNew(), rapOpenModel(), Ogmg::readLeftNullVector(), Ogen::saveGridToAFile(), CompositeGrid::saveGridToAFile(), and Ogmg::saveLeftNullVector().

HDF_DataBase * HDF_DataBase::openLocalFile ( int  p, AcessModeEnum  accessMode  ) const

protected

References Overture::abort(), aString, debug, max(), NULL, and Overture::OV_COMM.

Referenced by getDistributed(), and putDistributed().

HDF_DataBase & HDF_DataBase::operator=

(

const HDF_DataBase &

db

)

References accessMode, bufferWasCreatedInThisDirectory, dataBaseBuffer, debug, fileID, fileName, fullGroupPath, GenericDataBase::mode, GenericDataBase::numberOfLocalFilesForReading, GenericDataBase::numberOfLocalFilesForWriting, GenericDataBase::numberOfProcessorsUsedToWriteFile, GenericDataBase::operator=(), and serialDataBase.

GenericDataBase & HDF_DataBase::operator= ( const GenericDataBase &  db )

virtual

Reimplemented from GenericDataBase.

References GenericDataBase::className.

void HDF_DataBase::printStatistics ( ) const

virtual

Reimplemented from GenericDataBase.

int HDF_DataBase::put ( const float &  x, const aString &  name  )

virtual

!! NOTE : float will be replaced by the macro argument!

Reimplemented from GenericDataBase.

References accessMode, assert, closeStream(), dataBaseBuffer, fileID, fullGroupPath, max(), GenericDataBase::mode, GenericDataBase::normalMode, GenericDataBase::noStreamMode, NULL, processorForWriting, DataBaseBuffer::putToBuffer(), GenericDataBase::streamOutputMode, and write.

Referenced by ExposedPoints::initialize(), main(), mount(), ogen(), outputMovingGrids(), outputRefinementInfo(), outputRefinementInfoNew(), put(), putDistributed(), Ogen::saveGridToAFile(), CompositeGrid::saveGridToAFile(), Ogmg::saveLeftNullVector(), and Ogshow::saveSequence().

int HDF_DataBase::put ( const double &  x, const aString &  name  )

virtual

!! NOTE : double will be replaced by the macro argument!

Reimplemented from GenericDataBase.

References accessMode, assert, closeStream(), dataBaseBuffer, fileID, fullGroupPath, max(), GenericDataBase::mode, GenericDataBase::normalMode, GenericDataBase::noStreamMode, NULL, processorForWriting, DataBaseBuffer::putToBuffer(), GenericDataBase::streamOutputMode, and write.

int HDF_DataBase::put ( const int &  x, const aString &  name  )

virtual

!! NOTE : int will be replaced by the macro argument!

Reimplemented from GenericDataBase.

References accessMode, assert, closeStream(), dataBaseBuffer, fileID, fullGroupPath, max(), GenericDataBase::mode, GenericDataBase::normalMode, GenericDataBase::noStreamMode, NULL, processorForWriting, DataBaseBuffer::putToBuffer(), GenericDataBase::streamOutputMode, and write.

int HDF_DataBase::put ( const aString &  x, const aString &  name  )

virtual

Reimplemented from GenericDataBase.

References accessMode, assert, closeStream(), dataBaseBuffer, fileID, fullGroupPath, max(), GenericDataBase::mode, GenericDataBase::normalMode, GenericDataBase::noStreamMode, NULL, processorForWriting, DataBaseBuffer::putToBuffer(), GenericDataBase::streamOutputMode, and write.

int HDF_DataBase::put ( const bool &  x, const aString &  name  )

virtual

Reimplemented from GenericDataBase.

int HDF_DataBase::put ( const floatSerialArray &  x, const aString &  name  )

virtual

!! NOTE : floatSerialArray will be replaced by the macro argument!

!! NOTE : floatSerialArray will be replaced by the macro argument!

Reimplemented from GenericDataBase.

References Overture::abort(), accessMode, assert, closeStream(), dataBaseBuffer, debug, fileID, fullGroupPath, max(), GenericDataBase::mode, GenericDataBase::normalMode, GenericDataBase::noStreamMode, NULL, processorForWriting, DataBaseBuffer::putToBuffer(), GenericDataBase::streamOutputMode, and write.

int HDF_DataBase::put ( const doubleSerialArray &  x, const aString &  name  )

virtual

!! NOTE : doubleSerialArray will be replaced by the macro argument!

!! NOTE : doubleSerialArray will be replaced by the macro argument!

Reimplemented from GenericDataBase.

References Overture::abort(), accessMode, assert, closeStream(), dataBaseBuffer, debug, fileID, fullGroupPath, max(), GenericDataBase::mode, GenericDataBase::normalMode, GenericDataBase::noStreamMode, NULL, processorForWriting, DataBaseBuffer::putToBuffer(), GenericDataBase::streamOutputMode, and write.

int HDF_DataBase::put ( const intSerialArray &  x, const aString &  name  )

virtual

!! NOTE : intSerialArray will be replaced by the macro argument!

!! NOTE : intSerialArray will be replaced by the macro argument!

Reimplemented from GenericDataBase.

References Overture::abort(), accessMode, assert, closeStream(), dataBaseBuffer, debug, fileID, fullGroupPath, max(), GenericDataBase::mode, GenericDataBase::normalMode, GenericDataBase::noStreamMode, NULL, processorForWriting, DataBaseBuffer::putToBuffer(), GenericDataBase::streamOutputMode, and write.

int HDF_DataBase::put ( const int  x[], const aString &  name, const int  number  )

virtual

Reimplemented from GenericDataBase.

References put().

int HDF_DataBase::put ( const float  x[], const aString &  name, const int  number  )

virtual

Reimplemented from GenericDataBase.

References put().

int HDF_DataBase::put ( const double  x[], const aString &  name, const int  number  )

virtual

Reimplemented from GenericDataBase.

References put().

int HDF_DataBase::put ( const aString  x[], const aString &  name, const int  number  )

virtual

Reimplemented from GenericDataBase.

References accessMode, assert, closeStream(), dataBaseBuffer, fileID, fullGroupPath, max(), GenericDataBase::mode, GenericDataBase::normalMode, GenericDataBase::noStreamMode, NULL, processorForWriting, put(), DataBaseBuffer::putToBuffer(), GenericDataBase::streamOutputMode, and write.

int HDF_DataBase::putDistributed ( const floatArray &  x, const aString &  name  )

virtual

!! NOTE : floatArray will be replaced by the macro argument!

!! NOTE : floatArray will be replaced by the macro argument!

Reimplemented from GenericDataBase.

References accessMode, assert, aString, closeLocalFile(), closeStream(), dataBaseBuffer, debug, display(), fileID, fullGroupPath, getLocalArrayWithGhostBoundaries(), getSerialArrayName(), HSIZE_T, GenericDataBase::independentIO, max(), MAX_DISTRIBUTED_DIMENSIONS, GenericDataBase::mode, GenericDataBase::multipleFileIO, GenericDataBase::normalMode, GenericDataBase::noStreamMode, NULL, GenericDataBase::numberOfLocalFilesForWriting, openLocalFile(), Overture::OV_COMM, GenericDataBase::parallelWriteMode, processorForWriting, put(), DataBaseBuffer::putDistributedToBuffer(), sPrintF(), GenericDataBase::streamOutputMode, and write.

Referenced by main().

int HDF_DataBase::putDistributed ( const doubleArray &  x, const aString &  name  )

virtual

!! NOTE : doubleArray will be replaced by the macro argument!

!! NOTE : doubleArray will be replaced by the macro argument!

Reimplemented from GenericDataBase.

References accessMode, assert, aString, closeLocalFile(), closeStream(), dataBaseBuffer, debug, display(), fileID, fullGroupPath, getLocalArrayWithGhostBoundaries(), getSerialArrayName(), HSIZE_T, GenericDataBase::independentIO, max(), MAX_DISTRIBUTED_DIMENSIONS, GenericDataBase::mode, GenericDataBase::multipleFileIO, GenericDataBase::normalMode, GenericDataBase::noStreamMode, NULL, GenericDataBase::numberOfLocalFilesForWriting, openLocalFile(), Overture::OV_COMM, GenericDataBase::parallelWriteMode, processorForWriting, put(), DataBaseBuffer::putDistributedToBuffer(), sPrintF(), GenericDataBase::streamOutputMode, and write.

int HDF_DataBase::putDistributed ( const intArray &  x, const aString &  name  )

virtual

!! NOTE : intArray will be replaced by the macro argument!

!! NOTE : intArray will be replaced by the macro argument!

Reimplemented from GenericDataBase.

References accessMode, assert, aString, closeLocalFile(), closeStream(), dataBaseBuffer, debug, display(), fileID, fullGroupPath, getLocalArrayWithGhostBoundaries(), getSerialArrayName(), HSIZE_T, GenericDataBase::independentIO, max(), MAX_DISTRIBUTED_DIMENSIONS, GenericDataBase::mode, GenericDataBase::multipleFileIO, GenericDataBase::normalMode, GenericDataBase::noStreamMode, NULL, GenericDataBase::numberOfLocalFilesForWriting, openLocalFile(), Overture::OV_COMM, GenericDataBase::parallelWriteMode, processorForWriting, put(), DataBaseBuffer::putDistributedToBuffer(), sPrintF(), GenericDataBase::streamOutputMode, and write.

int HDF_DataBase::putSM	(	const floatArray &	x,
		const aString &	name
	)

void HDF_DataBase::reference ( const HDF_DataBase &  db )

protected

void HDF_DataBase::setMode ( const InputOutputMode &  mode = normalMode )

virtual

Reimplemented from GenericDataBase.

References GenericDataBase::bufferMode, bufferWasCreatedInThisDirectory, closeStream(), dataBaseBuffer, GenericDataBase::mode, GenericDataBase::normalMode, GenericDataBase::noStreamMode, NULL, DataBaseBuffer::openBuffer(), GenericDataBase::streamInputMode, and GenericDataBase::streamOutputMode.

Referenced by getFromADataBase(), ExposedPoints::initialize(), main(), ogen(), outputMovingGrids(), outputRefinementInfo(), outputRefinementInfoNew(), Ogmg::readLeftNullVector(), Ogen::saveGridToAFile(), CompositeGrid::saveGridToAFile(), and Ogmg::saveLeftNullVector().

int HDF_DataBase::turnOffWarnings ( )

virtual

Reimplemented from GenericDataBase.

References GenericDataBase::issueWarnings, and NULL.

Referenced by ShowFileReader::getAGrid(), ShowFileReader::getASolution(), ShowFileReader::getGeneralParameters(), and mount().

int HDF_DataBase::turnOnWarnings ( )

virtual

Reimplemented from GenericDataBase.

References GenericDataBase::issueWarnings.

Referenced by ShowFileReader::getAGrid(), ShowFileReader::getASolution(), ShowFileReader::getGeneralParameters(), and mount().

int HDF_DataBase::unmount ( )

virtual

Reimplemented from GenericDataBase.

References assert, closeStream(), dataBaseBuffer, debug, fileID, max(), NULL, GenericDataBase::numberOfLocalFilesForReading, OV_ABORT, serialDataBase, and unmount().

Referenced by MappingBuilder::build(), createMappings(), getFromADataBase(), ExposedPoints::initialize(), main(), ogen(), outputMovingGrids(), outputRefinementInfo(), outputRefinementInfoNew(), rapOpenModel(), Ogmg::readLeftNullVector(), Ogen::saveGridToAFile(), CompositeGrid::saveGridToAFile(), Ogmg::saveLeftNullVector(), and unmount().

GenericDataBase * HDF_DataBase::virtualConstructor ( ) const

virtual

Reimplemented from GenericDataBase.

References HDF_DataBase().

Member Data Documentation

enum HDF_DataBase::AcessModeEnum HDF_DataBase::accessMode

protected

Referenced by create(), HDF_DataBase(), link(), mount(), operator=(), put(), and putDistributed().

bool HDF_DataBase::bufferWasCreatedInThisDirectory

protected

Referenced by closeStream(), HDF_DataBase(), operator=(), setMode(), and ~HDF_DataBase().

DataBaseBuffer* HDF_DataBase::dataBaseBuffer

protected

Referenced by closeStream(), create(), flush(), get(), getDistributed(), HDF_DataBase(), link(), operator=(), put(), putDistributed(), setMode(), unmount(), and ~HDF_DataBase().

int HDF_DataBase::debug = 0

static

Referenced by getDistributed(), mount(), operator=(), put(), putDistributed(), unmount(), and ~HDF_DataBase().

int HDF_DataBase::fileID

protected

Referenced by create(), flush(), get(), getDistributed(), HDF_DataBase(), isNull(), link(), mount(), operator=(), put(), putDistributed(), and unmount().

aString HDF_DataBase::fileName

protected

Referenced by HDF_DataBase(), mount(), and operator=().

aString HDF_DataBase::fullGroupPath

protected

Referenced by create(), find(), flush(), get(), getDistributed(), HDF_DataBase(), isNull(), link(), locate(), mount(), operator=(), put(), and putDistributed().

int HDF_DataBase::processorForWriting

protected

Referenced by HDF_DataBase(), put(), and putDistributed().

HDF_DataBase** HDF_DataBase::serialDataBase

mutableprotected

Referenced by HDF_DataBase(), mount(), operator=(), and unmount().

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The documentation for this class was generated from the following files:

• HDF5_DataBase.h
• HDF5_DataBase.C
• HDF_DataBase.C