Ogen Class Reference

#include <Ogen.h>

Collaboration diagram for Ogen:

Public Types
enum	MovingGridOption { useOptimalAlgorithm =0, minimizeOverlap =1, useFullAlgorithm }
enum	OgenParameterEnum {   THEimproveQualityOfInterpolation, THEqualityBound, THEoutputGridOnFailure, THEabortOnAlgorithmFailure,   THEcomputeGeometryForMovingGrids, THEmaximumAngleDifferenceForNormalsOnSharedBoundaries }

Public Member Functions
	Ogen ()
	Ogen (GenericGraphicsInterface &ps)
	~Ogen ()
int	buildACompositeGrid (CompositeGrid &cg, MappingInformation &mapInfo, const IntegerArray &mapList, const int &numberOfMultigridLevels=1, const bool useAnOldGrid=FALSE)
int	changeParameters (CompositeGrid &cg, MappingInformation *mapInfo=NULL)
	Change Ogen parameters. (input) : pointer to the list of mappings (used to define explicit hole cutters)
int	printOrphanPoints (CompositeGrid &cg)
	Print the locations of orphan points.
void	set (const OgenParameterEnum option, const bool value)
void	set (const OgenParameterEnum option, const int value)
void	set (const OgenParameterEnum option, const real value)
void	turnOnHybridHoleCutting ()
void	turnOffHybridHoleCutting ()
int	updateOverlap (CompositeGrid &cg, MappingInformation &mapInfo)
int	updateOverlap (CompositeGrid &cg)
int	updateOverlap (CompositeGrid &cg, CompositeGrid &cgNew, const LogicalArray &hasMoved, const MovingGridOption &option=useOptimalAlgorithm)
int	updateRefinement (CompositeGrid &cg, const int &refinementLevel=-1)
int	updateRefinementNew (CompositeGrid &cg, const int &refinementLevel=-1)
int	updateRefinementNewer (CompositeGrid &cg, const int &refinementLevel=-1)
int	updateRefinementFillInterpolationData (CompositeGrid &cg, UpdateRefinementData &urd)
int	updateRefinementFillInterpolationDataNew (CompositeGrid &cg, UpdateRefinementData &urd)
int	resetGrid (CompositeGrid &cg)
int	updateParameters (CompositeGrid &cg, const int level=-1, const RealArray &minimumOverlap=Overture::nullRealArray())

Static Public Member Functions
static bool	canDiscretize (MappedGrid &g, const int iv[3], bool checkOneSidedAtBoundaries=true)
static int	checkParallelGhostWidth (CompositeGrid &cg)
	Check that there are enough parallel ghost lines for ogen.
static int	checkUpdateRefinement (GridCollection &gc)
static int	displayCompositeGridParameters (CompositeGrid &cg, FILE *file=stdout)
	Output composite grid parameters such as discretization width, interpolation width etc.
static int	saveGridToAFile (CompositeGrid &cg, aString &gridFileName, aString &gridName)
static int	checkCanInterpolate (CompositeGrid &cg, int grid, int donor, int numberToCheck, RealArray &r, IntegerArray &interpolates, IntegerArray &useBackupRules)
static int	checkCanInterpolate (CompositeGrid &cg, int grid, int donor, RealArray &r, IntegerArray &interpolates, IntegerArray &useBackupRules)

Public Attributes
int	debug
int	info
bool	useNewMovingUpdate
int	isMovingGridProblem
int	defaultInterpolationIsImplicit
int	myid
int	defaultNumberOfGhostPoints
bool	loadBalanceGrids
bool	doubleCheckInterpolation

Protected Types
enum	{ THEinverseMap = CompositeGrid::THEinverseMap, THEmask = CompositeGrid::THEmask, resetTheGrid =123456789, ISnonCuttingBoundaryPoint =MappedGrid::ISreservedBit1 }

Protected Member Functions
int	buildBounds (CompositeGrid &cg)
int	buildCutout (CompositeGrid &cg, MappingInformation &cutMapInfo)
int	chooseASide (MappedGrid &mg, int &side, int &axis)
	Ogen utility function: Choose a side of a grid.
bool	interpolateAPoint (CompositeGrid &cg, int grid, int iv[3], bool interpolatePoint, bool checkInterpolationCoords, bool checkBoundaryPoint, int infoLevel)
	Try to interpolate a point If interpolatePoint==true then attempt to interpolate the point. Return true if the point was interpolated.
int	interpolatePoints (CompositeGrid &cg, int grid, int numberToInterpolate, const IntegerArray &ia, IntegerArray &interpolates)
	Attempt to interpolate a list of points. For points that could interpolate the interpolation data mask, inverseGrid and inverseCoordinates are changed.
int	interpolateMixedBoundary (CompositeGrid &cg, int mixedBoundaryNumber)
int	interpolateMixedBoundary (CompositeGrid &cg, int mixedBoundaryNumber, int side, int axis, int grid, MappedGrid &g, int grid2, MappedGrid &g2, int offset[3], real rScale[3], real rOffset[3])
int	checkInterpolationOnBoundaries (CompositeGrid &cg)
int	classifyPoints (CompositeGrid &cg, realSerialArray &invalidPoint, int &numberOfInvalidPoints, const int &level, CompositeGrid &cg0)
int	classifyRedundantPoints (CompositeGrid &cg, const int &grid, const int &level, CompositeGrid &cg0)
int	computeOverlap (CompositeGrid &cg, CompositeGrid &cgOld, const int &level=0, const bool &movingGrids=FALSE, const IntegerArray &hasMoved=Overture::nullIntArray())
int	checkForOrphanPointsOnBoundaries (CompositeGrid &cg)
int	cutHoles (CompositeGrid &cg)
int	cutHolesNew (CompositeGrid &cg)
int	cutHolesNewer (CompositeGrid &cg)
int	explicitHoleCutting (CompositeGrid &cg)
	Cut holes with user defined explicit hole cutters.
int	getHoleWidth (CompositeGrid &cg, MappedGrid &g2, int pHoleMarker[3], IntegerArray &holeCenter, IntegerArray &holeMask, IntegerArray &holeWidth, RealArray &r, RealArray &x, const int *pIndexRange2, const int *pExtendedIndexRange2, const int *plocalIndexBounds2, int iv[3], int jv[3], int jpv[3], bool isPeriodic2[3], bool isPeriodic2p[3], const Index Iv[3], const int &grid, const int &grid2, int &ib, int &ib2, int &skipThisPoint, int &initialPoint, const int &numberOfDimensions, const int &axisp1, const int &axisp2, const real &cellCenterOffset, const int &maximumHoleWidth, int &numberOfHoleWidthWarnings)
int	countCrossingsWithRealBoundary (CompositeGrid &cg, const realArray &x, IntegerArray &crossings)
int	findTrueBoundary (CompositeGrid &cg)
int	interpolateAll (CompositeGrid &cg, IntegerArray &numberOfInterpolationPoints, CompositeGrid &cg0)
bool	isNeededForDiscretization (MappedGrid &g, const int iv[3])
bool	isOnInterpolationBoundary (MappedGrid &g, const int iv[3], const int &width=1)
bool	isNeededForMultigridRestriction (CompositeGrid &c, const int &grid, const int &l, const int iv[3])
real	computeInterpolationQuality (CompositeGrid &cg, const int &grid, const int &i1, const int &i2, const int &i3, real &qForward, real &qReverse)
int	markMaskAtGhost (CompositeGrid &cg)
int	markPointsNeededForInterpolation (CompositeGrid &cg, const int &grid, const int &lowerOrUpper=-1)
int	markPointsNeededForInterpolationNew (CompositeGrid &cg, const int &grid, const int &lowerOrUpper=-1)
int	markPointsReallyNeededForInterpolation (CompositeGrid &cg)
int	improveQuality (CompositeGrid &cg, const int &grid, RealArray &removedPointBound)
int	updateCanInterpolate (CompositeGrid &cg, CompositeGrid &cg0, RealArray &removedPointBound)
int	plot (const aString &title, CompositeGrid &cg, const int &queryForChanges=TRUE)
int	projectToParameterBoundary (const real rv0[3], const real rv1[3], real rv[3], const int numberOfDimensions, const int grid)
int	projectToBoundary (CompositeGrid &cg, const int &grid, const realArray &r, const int iv[3], const int ivp[3], real rv[3])
int	queryAPoint (CompositeGrid &cg)
int	removeExteriorPoints (CompositeGrid &cg, const bool boundariesHaveCutHoles=FALSE)
int	removeExteriorPointsNew (CompositeGrid &cg, const bool boundariesHaveCutHoles=FALSE)
int	sweepOutHolePoints (CompositeGrid &cg)
int	unmarkBoundaryInterpolationPoints (CompositeGrid &cg, const int &grid)
int	unmarkInterpolationPoints (CompositeGrid &cg, const bool &unMarkAll=FALSE)
int	updateGeometry (CompositeGrid &cg, CompositeGrid &cgOld, const bool &movingGrids=FALSE, const IntegerArray &hasMoved=Overture::nullIntArray())
int	adjustBoundary (CompositeGrid &cg, const Integer &k1, const Integer &k2, const intSerialArray &i1, const realSerialArray &x)
int	adjustBoundarySerial (CompositeGrid &cg, const Integer &k1, const Integer &k2, const intSerialArray &i1, const realSerialArray &x)
int	oppositeBoundaryIndex (MappedGrid &g, const int &ks, const int &kd)
int	adjustForNearbyBoundaries (CompositeGrid &cg, IntegerArray &numberOfInterpolationPoints, intSerialArray *iInterp)
int	determineBoundaryPointsToAdjust (CompositeGrid &cg, const int grid, const int grid2, IntegerArray &sidesShare, const int ks1, const int kd1, const int ks2, const int kd2, BoundaryAdjustment &bA, bool &first, bool &needAdjustment, int numberOfDirectionsAdjusted, bool &directionAdjusted, bool &wasAdjusted, Range &R, IntegerArray &ia, IntegerArray &ok, const int it, real shareTol[3][2], RealArray &r, RealArray &r2, RealArray &r3, RealArray &rOk, RealArray &xx, RealArray &x2, RealArray &x3)
	Determine the points to adjust on a shared boundary when interpolating points from grid side (ks1,kd1)
int	checkBoundaryAdjustment (CompositeGrid &cg, const int grid, const int grid2, const int ks1, const int kd1, BoundaryAdjustment &bA, int numberOfDirectionsAdjusted, Range &R, IntegerArray &ia, IntegerArray &ok, RealArray &r, RealArray &r2, RealArray &r3, RealArray &rOk, RealArray &xx, RealArray &x2, RealArray &x3)
	Check the boundary adjustment for debugging purposes.
int	checkForBoundaryAdjustments (CompositeGrid &cg, int k1, int k2, IntegerArray &sidesShare, bool &needAdjustment, int manualSharedBoundaryNumber[2][3])
int	getAdjustmentVectors (CompositeGrid &cg, BoundaryAdjustment &bA, int grid, int grid2, bool &needAdjustment, int numberOfPoints, int it, int ks1, int kd1, int ks2, int kd2, Index Iv[3], RealArray &x1)
bool	canInterpolate (CompositeGrid &cg, const Integer &k10, const Integer &k20, const RealArray &r, const LogicalArray &ok, const LogicalArray &useBackupRules, const Logical checkForOneSided)
int	checkCrossings (CompositeGrid &cg, const int &numToCheck, const IntegerArray &ia, intArray &mask, realArray &x, realArray &vertex, IntegerArray &crossings, const Range &Rx, const int &usedPoint)
int	checkHoleCutting (CompositeGrid &cg)
int	computeInterpolationStencil (CompositeGrid &cg, const int &grid, const int &gridI, const real r[3], int stencil[3][2], bool useOneSidedAtBoundaries=true, bool useOddInterpolationWidth=false)
int	conformToCmpgrd (CompositeGrid &cg)
int	determineMinimalIndexRange (CompositeGrid &cg)
int	estimateSharedBoundaryTolerance (CompositeGrid &cg)
int	findBestGuess (CompositeGrid &cg, const int &grid, const int &numberToCheck, intSerialArray &ia, realSerialArray &x, realSerialArray &r, realSerialArray &rI, intSerialArray &inverseGrid, const realSerialArray &center)
int	findClosestBoundaryPoint (MappedGrid &mg, real *x, int *iv, int *ivb, int &sideb, int &axisb)
	Find the closest boundary point – use x-distance!
int	generateInterpolationArrays (CompositeGrid &cg, const IntegerArray &numberOfInterpolationPoints, intSerialArray *iInterp)
int	initialize ()
int	lastChanceInterpolation (CompositeGrid &cg, CompositeGrid &cg0, const int &grid, const IntegerArray &ia, const IntegerArray &ok, intSerialArray &interpolates, int &numberOfInvalidPoints, realSerialArray &invalidPoint, const int &printDiagnosticMessages=false, const bool &tryBackupRules=false, const bool saveInvalidPoints=true, int lastChanceOption=0)
	This routine is called for points that could not be interpolated when perhaps they should be able to.
int	movingUpdate (CompositeGrid &cg, CompositeGrid &cgOld, const LogicalArray &hasMoved, const MovingGridOption &option=useOptimalAlgorithm)
int	movingUpdateNew (CompositeGrid &cg, CompositeGrid &cgOld, const LogicalArray &hasMoved, const MovingGridOption &option=useOptimalAlgorithm)
	The new moving grid generator (parallel version)
int	preInterpolateGrids (CompositeGrid &cg)
int	setGridParameters (CompositeGrid &cg)
bool	sidesShareBoundary (CompositeGrid &cg, int grid1, int side1, int dir1, int grid2, int side2, int dir2) const
	return true if grid1 face=(side1,dir1) shares a boundary with grid2 face=(side2,dir2)
void	getSharedBoundaryTolerances (CompositeGrid &cg, int grid1, int side1, int dir1, int grid2, int side2, int dir2, real &rTol, real &xTol, real &nTol) const
int	updateBoundaryAdjustment (CompositeGrid &cg, const int &grid, const int &grid2, intSerialArray *iag, realSerialArray *rg, realSerialArray *xg, IntegerArray &sidesShare)
int	getNormal (const int &numberOfDimensions, const int &side, const int &axis, const RealArray &xr, real signForJacobian, RealArray &normal)
int	markOffAxisRefinementMask (int numberOfDimensions, Index Ivr[3], Index Ivb[3], int rf[3], intSerialArray &mask, const intSerialArray &maskb)
int	setRefinementMaskFace (intSerialArray &mask, int side, int axis, int numberOfDimensions, int rf[3], Index &I1r, Index &I2r, Index &I3r, const intSerialArray &mask00, const intSerialArray &mask10, const intSerialArray &mask01, const intSerialArray &mask11)
int	checkRefinementInterpolation (CompositeGrid &cg)
int	checkRefinementInterpolationNew (CompositeGrid &cg)

Protected Attributes
GenericGraphicsInterface *	ps
GraphicsParameters	psp
bool	plotTitles
bool	makeAdjustmentsForNearbyBoundaries
bool	outputGridOnFailure
bool	abortOnAlgorithmFailure
FILE *	logFile
FILE *	plogFile
FILE *	checkFile
real	boundaryEps
RealArray	gridScale
RealArray	rBound
real	maximumAngleDifferenceForNormalsOnSharedBoundaries
int	computeGeometryForMovingGrids
IntegerArray	geometryNeedsUpdating
bool	numberOfGridsHasChanged
bool	checkForOneSided
IntegerArray	isNew
int	numberOfHolePoints
RealArray	holePoint
IntegerArray	plotHolePoints
int	numberOfOrphanPoints
RealArray	orphanPoint
IntegerArray	plotOrphanPoints
int	maximumNumberOfPointsToInvertAtOneTime
int	maskRatio [3]
int	holeCuttingOption
bool	useAnOldGrid
int	numberOfArrays
IntegerArray	warnForSharedSides
int	numberOfMixedBoundaries
IntegerArray	mixedBoundary
RealArray	mixedBoundaryValue
int	numberOfManualHoles
IntegerArray	manualHole
RealArray	manualHoleValue
bool	plotExplicitHoleCutters
ListOfMappingRC *	holeCutters
int	numberOfManualSharedBoundaries
IntegerArray	manualSharedBoundary
RealArray	manualSharedBoundaryValue
int	numberOfSharedBoundaryTolerances
IntegerArray	sharedBoundaryTolerances
RealArray	sharedBoundaryTolerancesValue
int	numberOfNonCuttingBoundaries
IntegerArray	nonCuttingBoundaryPoints
intSerialArray *	backupValues
IntegerArray	backupValuesUsed
IntegerArray	preInterpolate
MappingInformation	cutMapInfo
bool	useBoundaryAdjustment
bool	improveQualityOfInterpolation
real	qualityBound
bool	minimizeTheOverlap
bool	allowHangingInterpolation
bool	allowBackupRules
bool	classifyHolesForHybrid
int	incrementalHoleSweep
bool	useLocalBoundingBoxes
char	buff [200]
real	totalTime
real	timeUpdateGeometry
real	timeInterpolateBoundaries
real	timeCutHoles
real	timeCheckHoleCutting
real	timeFindTrueBoundary
real	timeRemoveExteriorPoints
real	timeImproperInterpolation
real	timeProperInterpolation
real	timeAllInterpolation
real	timeRemoveRedundant
real	timeImproveQuality
real	timePreInterpolate

Member Enumeration Documentation

anonymous enum

protected

Enumerator
THEinverseMap
THEmask
resetTheGrid
ISnonCuttingBoundaryPoint

enum Ogen::MovingGridOption

Enumerator
useOptimalAlgorithm
minimizeOverlap
useFullAlgorithm

enum Ogen::OgenParameterEnum

Enumerator
THEimproveQualityOfInterpolation
THEqualityBound
THEoutputGridOnFailure
THEabortOnAlgorithmFailure
THEcomputeGeometryForMovingGrids
THEmaximumAngleDifferenceForNormalsOnSharedBoundaries

Constructor & Destructor Documentation

Ogen::Ogen

(

)

References initialize().

Ogen::Ogen

(

GenericGraphicsInterface &

ps

)

References initialize(), and ps.

Ogen::~Ogen

(

)

References checkFile, holeCutters, logFile, NULL, and plogFile.

Member Function Documentation

int Ogen::adjustBoundary ( CompositeGrid &  cg, const Integer &  k1, const Integer &  k2, const intSerialArray &  i1, const realSerialArray &  x  )

protected

References Overture::abort(), BoundaryAdjustment::acrossGrid(), adjustBoundarySerial(), AG, assert, BA, BoundaryAdjustment::boundaryAdjustment(), CompositeGridData::boundaryAdjustment, BoundaryAdjustment::computedGeometry, debug, getLocalArrayWithGhostBoundaries(), TrivialArray< Type, Dim >::getNumberOfElements(), ParallelUtility::getSum(), gridIndexRange, BoundaryAdjustment::hasSharedSides(), i2, ia, IP, mask, max(), MPI_Real, myid, NULL, GenericGridCollection::numberOfComponentGrids(), GridCollection::numberOfDimensions(), OB, BoundaryAdjustment::oppositeBoundary(), oppositeBoundaryIndex(), Overture::OV_COMM, plogFile, printF(), q, r, R, rBound, CompositeGrid::rcData, BoundaryAdjustment::share, THEinverseMap, THEmask, X, and X0.

Referenced by classifyPoints(), cutHoles(), cutHolesNew(), cutHolesNewer(), determineBoundaryPointsToAdjust(), interpolateAll(), interpolateAPoint(), interpolatePoints(), lastChanceInterpolation(), movingUpdate(), movingUpdateNew(), preInterpolateGrids(), updateBoundaryAdjustment(), and updateCanInterpolate().

int Ogen::adjustBoundarySerial ( CompositeGrid &  cg, const Integer &  k1, const Integer &  k2, const intSerialArray &  i1, const realSerialArray &  x  )

protected

References Overture::abort(), BoundaryAdjustment::acrossGrid(), AG, assert, BA, BoundaryAdjustment::boundaryAdjustment(), CompositeGridData::boundaryAdjustment, BoundaryAdjustment::computedGeometry, debug, TrivialArray< Type, Dim >::getNumberOfElements(), gridIndexRange, BoundaryAdjustment::hasSharedSides(), i2, IP, GenericGridCollection::numberOfComponentGrids(), GridCollection::numberOfDimensions(), OB, BoundaryAdjustment::oppositeBoundary(), oppositeBoundaryIndex(), plogFile, printF(), R, rBound, CompositeGrid::rcData, BoundaryAdjustment::share, THEinverseMap, THEmask, X, and X0.

Referenced by adjustBoundary().

int Ogen::adjustForNearbyBoundaries ( CompositeGrid &  cg, IntegerArray &  numberOfInterpolationPoints, intSerialArray *  iInterp  )

protected

References abs(), assert, MappedGrid::boundaryCondition(), MappedGrid::boundaryDiscretizationWidth(), boundaryEps, MappedGrid::center(), center, End, fabs(), getBoundaryIndex(), getGhostIndex(), MappedGrid::getRectangularGridParameters(), MappedGrid::gridIndexRange(), i2, ia, MappedGrid::indexRange(), CompositeGrid::inverseCoordinates, CompositeGrid::inverseGrid, Mapping::inverseMap(), MappedGrid::isAllCellCentered(), GridCollection::ISinterpolationPoint, MappedGrid::isRectangular(), mask, MappedGrid::mask(), max(), min(), GenericGridCollection::numberOfBaseGrids(), GenericGridCollection::numberOfComponentGrids(), GridCollection::numberOfDimensions(), MappedGrid::numberOfDimensions(), printF(), r, R, rBound, Start, x, and XC.

Referenced by classifyPoints().

int Ogen::buildACompositeGrid	(	CompositeGrid &	cg,
		MappingInformation &	mapInfo,
		const IntegerArray &	mapList,
		const int &	numberOfMultigridLevels = 1,
		const bool	useAnOldGrid = FALSE
	)

References Overture::abort(), CompositeGrid::addMultigridCoarsening(), LoadBalancer::assignWorkLoads(), CompositeGridData::boundaryAdjustment, c, GenericGridCollection::COMPUTEnothing, debug, ReferenceCounting::decrementReferenceCount(), defaultInterpolationIsImplicit, defaultNumberOfGhostPoints, LoadBalancer::determineLoadBalance(), display(), GridCollection::displayDistribution(), getCPU(), MappingRC::getMapping(), ParallelUtility::getMaxValue(), ParallelUtility::getMinValue(), GenericGridCollectionData::gridDistributionList, MappedGrid::gridIndexRange(), ReferenceCounting::incrementReferenceCount(), info, CompositeGrid::interpolationCoordinates, CompositeGrid::interpolationIsImplicit, CompositeGrid::interpolationOverlap, CompositeGrid::interpolationPoint, CompositeGrid::interpolationPreference, CompositeGrid::interpolationWidth, CompositeGrid::interpoleeGrid, CompositeGrid::interpoleeLocation, loadBalanceGrids, LogicalTrue, MappedGrid::mapping(), MappingInformation::mappingList, CompositeGrid::maximumHoleCuttingDistance, CompositeGrid::mayCutHoles, CompositeGrid::mayInterpolate, CompositeGrid::multigridCoarseningRatio, CompositeGrid::multigridLevel, CompositeGrid::multigridProlongationWidth, CompositeGrid::multigridRestrictionWidth, myid, NULL, nullRange, GenericGridCollection::numberOfBaseGrids(), CompositeGrid::numberOfCompleteMultigridLevels(), GenericGridCollection::numberOfComponentGrids(), CompositeGrid::numberOfInterpolationPoints, GenericGridCollection::numberOfMultigridLevels(), printF(), CompositeGrid::rcData, REAL_MAX, TrivialArray< Type, Dim >::redim(), MappedGrid::reference(), MappedGrid::setNumberOfGhostPoints(), MappedGrid::setSharedBoundaryTolerance(), CompositeGrid::sharedSidesMayCutHoles, CompositeGrid::specifyProcesses(), SQRT, CompositeGrid::THEinterpolationCoordinates, CompositeGrid::THEinterpolationPoint, CompositeGrid::THEinterpoleeGrid, CompositeGrid::THEinterpoleeLocation, GenericGridCollection::THEmultigridLevel, CompositeGrid::update(), and useAnOldGrid.

Referenced by main(), plot3dToOverture(), and showFileFromDataFile().

int Ogen::buildBounds ( CompositeGrid &  cg )

protected

References axis1, axis2, boundaryEps, debug, End, CompositeGrid::epsilon(), MappedGrid::extendedIndexRange(), MappedGrid::gridSpacing(), MappedGrid::indexRange(), logFile, GenericGridCollection::numberOfBaseGrids(), GenericGridCollection::numberOfComponentGrids(), rBound, and Start.

Referenced by updateGeometry(), and updateOverlap().

int Ogen::buildCutout ( CompositeGrid &  cg, MappingInformation &  cutMapInfo  )

protected

References Overture::abort(), Mapping::approximateGlobalInverse, axis1, axis2, axis3, MappedGrid::boundingBox(), boundingBox, MappedGrid::center(), center, End, extendedGridIndexRange(), getCPU(), getIndex(), MappingRC::getMapping(), Mapping::getName(), holePoint, i2, ia, info, Mapping::intersects(), MappedGrid::mapping(), MappingInformation::mappingList, Mapping::mappingName, mask, MappedGrid::mask(), GenericGridCollection::numberOfComponentGrids(), GridCollection::numberOfDimensions(), numberOfHolePoints, R, Start, MappedGrid::THEboundingBox, TRUE, MappedGrid::update(), and x.

bool Ogen::canDiscretize ( MappedGrid &  g, const int  iv[3], bool  checkOneSidedAtBoundaries = true  )

static

References axis1, axis2, axis3, boundaryCondition, MappedGrid::boundaryCondition(), boundaryDiscretizationWidth, MappedGrid::boundaryDiscretizationWidth(), discretizationWidth, MappedGrid::discretizationWidth(), extendedIndexRange, MappedGrid::extendedIndexRange(), GET_LOCAL, iab, isPeriodic, MappedGrid::isPeriodic(), MappedGrid::ISusedPoint, mask, MappedGrid::mask(), and MappedGrid::numberOfDimensions().

Referenced by Ogmg::buildExtraLevels(), Ogmg::buildExtraLevelsNew(), checkOverlappingGrid(), classifyRedundantPoints(), lastChanceInterpolation(), movingUpdate(), movingUpdateNew(), unmarkBoundaryInterpolationPoints(), unmarkInterpolationPoints(), and updateCanInterpolate().

bool Ogen::canInterpolate ( CompositeGrid &  cg, const Integer &  k10, const Integer &  k20, const RealArray &  r, const LogicalArray &  ok, const LogicalArray &  useBackupRules, const Logical  checkForOneSided  )

protected

Referenced by checkInterpolationOnBoundaries(), updateRefinement(), updateRefinementFillInterpolationData(), updateRefinementFillInterpolationDataNew(), and updateRefinementNew().

int Ogen::changeParameters	(	CompositeGrid &	cg,
		MappingInformation *	mapInfo = NULL
	)

Change Ogen parameters. (input) : pointer to the list of mappings (used to define explicit hole cutters)

References ListOfMappingRC::addElement(), DialogData::addInfoLabel(), allowBackupRules, GenericGraphicsInterface::appendToTheDefaultPrompt(), assert, aString, MappedGrid::boundaryCondition(), buff, GenericGraphicsInterface::buildCascadingMenu(), GUIState::buildPopup(), c, CompositeGrid::changeToAllCellCentered(), CompositeGrid::changeToAllVertexCentered(), checkParallelGhostWidth(), chooseASide(), classifyHolesForHybrid, debug, MappedGrid::dimension(), MappedGrid::discretizationWidth(), display(), displayCompositeGridParameters(), CompositeGrid::domain, domainName, GenericGridCollection::domainNumber, End, extendedGridIndexRange(), geometryNeedsUpdating, GenericGraphicsInterface::getAnswer(), getBoundaryIndex(), GenericGridCollection::getDomainName(), ListOfMappingRC::getLength(), GenericGraphicsInterface::getMenuItem(), MappingRC::getName(), MappedGrid::getName(), MappedGrid::gridIndexRange(), gridIndexRange, holeCutters, holeCuttingOption, improveQualityOfInterpolation, GenericGraphicsInterface::inputString(), interpolateMixedBoundary(), CompositeGrid::interpolationIsImplicit, CompositeGrid::interpolationWidth, manualHole, manualSharedBoundary, manualSharedBoundaryValue, MappedGrid::mapping(), MappingInformation::mappingList, Mapping::mappingName, max(), maximumAngleDifferenceForNormalsOnSharedBoundaries, CompositeGrid::maximumHoleCuttingDistance, maximumNumberOfPointsToInvertAtOneTime, CompositeGrid::mayCutHoles, CompositeGrid::mayInterpolate, min(), minimizeTheOverlap, mixedBoundary, mixedBoundaryValue, MappedGridData::mixedPhysicalInterpolationBoundary, myid, nonCuttingBoundaryPoints, NULL, GenericGridCollection::numberOfBaseGrids(), GenericGridCollection::numberOfComponentGrids(), GridCollection::numberOfDimensions(), MappedGrid::numberOfDimensions(), GenericGridCollectionData::numberOfDomains, GenericGridCollection::numberOfDomains(), numberOfManualHoles, numberOfManualSharedBoundaries, numberOfMixedBoundaries, GenericGridCollection::numberOfMultigridLevels(), numberOfNonCuttingBoundaries, numberOfSharedBoundaryTolerances, GenericGraphicsInterface::outputString(), OV_ABORT, plot(), GenericGraphicsInterface::popGUI(), preInterpolate, printF(), ps, GenericGraphicsInterface::pushGUI(), qualityBound, R, REAL_EPSILON, REAL_MAX, RI, MappedGrid::setBoundaryCondition(), MappedGrid::setBoundaryFlag(), GenericGridCollection::setDomainName(), DialogData::setExitCommand(), DialogData::setPushButtons(), DialogData::setWindowTitle(), share, sharedBoundaryTolerances, sharedBoundaryTolerancesValue, CompositeGrid::sharedSidesMayCutHoles, sPrintF(), sScanF(), Start, GenericGraphicsInterface::stopReadingCommandFile(), GenericGridCollection::THEdomain, twoPi, GenericGraphicsInterface::unAppendTheDefaultPrompt(), CompositeGrid::update(), updateGeometry(), updateParameters(), useBoundaryAdjustment, useLocalBoundingBoxes, and MappingRC::useRobustInverse().

int Ogen::checkBoundaryAdjustment ( CompositeGrid &  cg, const int  grid, const int  grid2, const int  ks1, const int  kd1, BoundaryAdjustment &  bA, int  numberOfDirectionsAdjusted, Range &  R, IntegerArray &  ia, IntegerArray &  ok, RealArray &  r, RealArray &  r2, RealArray &  r3, RealArray &  rOk, RealArray &  xx, RealArray &  x2, RealArray &  x3  )

protected

Check the boundary adjustment for debugging purposes.

References axis1, axis2, axis3, BoundaryAdjustment::boundaryAdjustment(), debug, fabs(), max(), min(), GridCollection::numberOfDimensions(), plogFile, and r.

Referenced by updateBoundaryAdjustment().

int Ogen::checkCanInterpolate ( CompositeGrid &  cg, int  grid, int  donor, int  numberToCheck, RealArray &  r, IntegerArray &  interpolates, IntegerArray &  useBackupRules  )

static

References CanInterpolate::canInterpolate(), CanInterpolate::CanInterpolateQueryData::id, CompositeGrid::interpolationWidth, max(), GridCollection::numberOfDimensions(), and r.

Referenced by checkCanInterpolate(), checkOverlappingGrid(), classifyPoints(), interpolateAll(), interpolateAPoint(), interpolatePoints(), lastChanceInterpolation(), and movingUpdateNew().

int Ogen::checkCanInterpolate ( CompositeGrid &  cg, int  grid, int  donor, RealArray &  r, IntegerArray &  interpolates, IntegerArray &  useBackupRules  )

static

References checkCanInterpolate().

int Ogen::checkCrossings ( CompositeGrid &  cg, const int &  numToCheck, const IntegerArray &  ia, intArray &  mask, realArray &  x, realArray &  vertex, IntegerArray &  crossings, const Range &  Rx, const int &  usedPoint  )

protected

References countCrossingsWithRealBoundary(), holePoint, GridCollection::numberOfDimensions(), numberOfHolePoints, and R.

Referenced by removeExteriorPoints().

int Ogen::checkForBoundaryAdjustments ( CompositeGrid &  cg, int  k1, int  k2, IntegerArray &  sidesShare, bool &  needAdjustment, int  manualSharedBoundaryNumber[2][3]  )

protected

References BoundaryAdjustment::acrossGrid(), GenericGridCollection::baseGridNumber, BoundaryAdjustment::boundaryAdjustment(), CompositeGridData::boundaryAdjustment, MappedGrid::boundaryCondition(), BoundaryAdjustment::computedGeometry, BoundaryAdjustment::create(), BoundaryAdjustment::destroy(), MappedGrid::dimension(), BoundaryAdjustment::doNotShare, GET_LOCAL_CONST, TrivialArray< Type, Dim >::getBase(), TrivialArray< Type, Dim >::getBound(), getIndex(), ParallelUtility::getLocalArrayBounds(), MappedGrid::gridIndexRange(), BoundaryAdjustment::hasSharedSides(), LogicalTrue, manualSharedBoundary, MappedGrid::mask(), mask1, CompositeGrid::mayInterpolate, myid, GenericGridCollection::numberOfBaseGrids(), GenericGridCollection::numberOfComponentGrids(), GridCollection::numberOfDimensions(), numberOfManualSharedBoundaries, BoundaryAdjustment::oppositeBoundary(), CompositeGrid::rcData, TrivialArray< Type, Dim >::redim(), MappedGrid::sharedBoundaryFlag(), BoundaryAdjustment::sidesShare(), THEinverseMap, and BoundaryAdjustment::unknown.

Referenced by updateBoundaryAdjustment().

int Ogen::checkForOrphanPointsOnBoundaries ( CompositeGrid &  cg )

protected

References axis1, MappedGrid::boundaryCondition(), MappedGrid::center(), center, End, MappedGrid::extendedIndexRange(), getBoundaryIndex(), MappingRC::getName(), i2, info, MappedGrid::ISdiscretizationPoint, MappedGrid::ISinterpolationPoint, MappedGrid::mapping(), Mapping::mappingName, mask, MappedGrid::mask(), GenericGridCollection::numberOfBaseGrids(), GenericGridCollection::numberOfComponentGrids(), GridCollection::numberOfDimensions(), numberOfOrphanPoints, orphanPoint, R, and Start.

int Ogen::checkHoleCutting ( CompositeGrid &  cg )

protected

References MappedGrid::center(), center, debug, dimension, MappedGrid::dimension(), displayMask(), eir, MappedGrid::extendedIndexRange(), GET_LOCAL, getCPU(), getIndex(), ParallelUtility::getLocalArrayBounds(), getLocalArrayWithGhostBoundaries(), MappedGrid::getName(), MappedGrid::getRectangularGridParameters(), ParallelUtility::getSum(), MappedGrid::gridIndexRange(), i2, ia, info, interpolateAPoint(), interpolatePoints(), CompositeGrid::inverseCoordinates, CompositeGrid::inverseGrid, MappedGrid::isAllCellCentered(), MappedGrid::isRectangular(), logFile, MASK, MappedGrid::mask(), max(), min(), GenericGridCollection::numberOfBaseGrids(), GridCollection::numberOfDimensions(), GenericGridCollection::numberOfGrids(), numberOfOrphanPoints, orphanPoint, plogFile, printF(), R, sPrintF(), timeCheckHoleCutting, MappedGrid::USESbackupRules, and XC.

Referenced by cutHoles(), cutHolesNew(), and cutHolesNewer().

int Ogen::checkInterpolationOnBoundaries ( CompositeGrid &  cg )

protected

References Overture::abort(), axis1, axis2, axis3, MappedGrid::boundaryCondition(), boundaryEps, MappedGrid::boundingBox(), boundingBox, buff, canInterpolate(), MappedGrid::center(), center, checkArrayIDs(), Overture::checkMemoryUsage(), GenericGridCollection::COMPUTEnothing, debug, delta, displayMask(), End, estimateSharedBoundaryTolerance(), extendedGridIndexRange(), MappedGrid::extendedIndexRange(), fabs(), FOR_3D, fPrintF(), GET_LOCAL, getBoundaryIndex(), getCPU(), ParallelUtility::getLocalArrayBounds(), getLocalArrayWithGhostBoundaries(), MappingRC::getMapping(), ParallelUtility::getMaxValue(), MappingRC::getName(), Mapping::getName(), MappedGrid::getName(), getNormal(), MappedGrid::getRectangularGridParameters(), Mapping::getSignForJacobian(), Mapping::getTypeOfCoordinateSingularity(), MappedGrid::gridIndexRange(), MappedGrid::gridSpacing(), i2, ia, info, interpolateMixedBoundary(), CompositeGrid::interpolationCoordinates, CompositeGrid::interpolationPoint, CompositeGrid::interpoleeGrid, Mapping::intersects(), CompositeGrid::inverseCoordinates, CompositeGrid::inverseGrid, Mapping::inverseMap(), Mapping::inverseMapS(), ip, ip1, MappedGrid::isAllCellCentered(), MappedGrid::isAllVertexCentered(), MappedGrid::ISinteriorBoundaryPoint, MappedGrid::ISinterpolationPoint, isNew, ISnonCuttingBoundaryPoint, MappedGrid::isPeriodic(), MappedGrid::isRectangular(), logFile, manualSharedBoundary, Mapping::map(), MappedGrid::mapping(), Mapping::mappingName, Mapping::mapS(), mask, MappedGrid::mask(), max(), maximumAngleDifferenceForNormalsOnSharedBoundaries, CompositeGrid::mayCutHoles, CompositeGrid::mayInterpolate, mixedBoundary, normal, nullRange, Overture::nullRealArray(), Overture::nullRealDistributedArray(), GenericGridCollection::numberOfBaseGrids(), GenericGridCollection::numberOfComponentGrids(), GridCollection::numberOfDimensions(), MappedGrid::numberOfDimensions(), CompositeGrid::numberOfInterpolationPoints, numberOfManualSharedBoundaries, numberOfMixedBoundaries, plogFile, Mapping::polarSingularity, preInterpolateGrids(), printF(), r, R, rBound, rBound2, MappedGrid::sharedBoundaryFlag(), MappedGrid::sharedBoundaryTolerance(), sPrintF(), Start, CompositeGrid::THEinterpolationCoordinates, CompositeGrid::THEinterpolationPoint, CompositeGrid::THEinterpoleeGrid, CompositeGrid::THEinterpoleeLocation, timeInterpolateBoundaries, timePreInterpolate, totalTime, CompositeGrid::update(), updateBoundaryAdjustment(), useBoundaryAdjustment, MappedGrid::vertex(), MappedGrid::vertexBoundaryNormal(), MappedGrid::vertexBoundaryNormalArray(), warnForSharedSides, x, XC, XV, XV0, XV1, and XV2.

Referenced by computeOverlap().

int Ogen::checkParallelGhostWidth ( CompositeGrid &  cg )

static

Check that there are enough parallel ghost lines for ogen.

For implicit interpolation we need (iw-1)/2 ghost lines. For explicit interpolation we need (iw+dw-2)/2 ghost lines.

References discretizationWidth, MappedGrid::getMinimumNumberOfDistributedGhostLines(), CompositeGrid::interpolationIsImplicit, CompositeGrid::interpolationWidth, max(), GenericGridCollection::numberOfComponentGrids(), GridCollection::numberOfDimensions(), OV_ABORT, and printF().

Referenced by changeParameters(), and computeOverlap().

int Ogen::checkRefinementInterpolation ( CompositeGrid &  cg )

protected

References axis3, GenericGridCollection::baseGridNumber, ci, dx, End, extendedGridIndexRange(), fabs(), MappedGrid::getRectangularGridParameters(), MappedGrid::gridIndexRange(), CompositeGrid::interpolationCoordinates, CompositeGrid::interpolationPoint, CompositeGrid::interpoleeGrid, interpoleeGrid, ip, MappedGrid::isRectangular(), max(), GenericGridCollection::numberOfComponentGrids(), GridCollection::numberOfDimensions(), CompositeGrid::numberOfInterpolationPoints, r, REAL_EPSILON, Start, MappedGrid::vertex(), VERTEX0, VERTEX1, VERTEX2, and x.

Referenced by updateRefinement(), updateRefinementNew(), and updateRefinementNewer().

int Ogen::checkRefinementInterpolationNew ( CompositeGrid &  cg )

protected

References axis3, GenericGridCollection::baseGridNumber, ci, dx, End, extendedGridIndexRange(), fabs(), MappedGrid::getRectangularGridParameters(), MappedGrid::gridIndexRange(), CompositeGrid::interpolationCoordinates, CompositeGrid::interpolationPoint, CompositeGrid::interpoleeGrid, interpoleeGrid, ip, MappedGrid::isRectangular(), max(), GenericGridCollection::numberOfComponentGrids(), GridCollection::numberOfDimensions(), CompositeGrid::numberOfInterpolationPoints, r, REAL_EPSILON, Start, MappedGrid::vertex(), VERTEX0, VERTEX1, VERTEX2, and x.

int Ogen::checkUpdateRefinement ( GridCollection &  gc )

static

References GenericGridCollection::baseGridNumber, c, debug, FOR_3IJD, getIndex(), getLocalArrayWithGhostBoundaries(), gid, GenericGridCollection::gridNumber, i2, mask, MappedGrid::mask(), mask2, GenericGridCollection::numberOfComponentGrids(), GenericGridCollection::numberOfRefinementLevels(), printF(), and GridCollection::refinementLevel.

Referenced by main().

int Ogen::chooseASide ( MappedGrid &  mg, int &  side, int &  axis  )

protected

Ogen utility function: Choose a side of a grid.

References GenericGraphicsInterface::appendToTheDefaultPrompt(), assert, aString, MappedGrid::boundaryCondition(), GenericGraphicsInterface::getMenuItem(), MappedGrid::getName(), NULL, MappedGrid::numberOfDimensions(), printF(), ps, and GenericGraphicsInterface::unAppendTheDefaultPrompt().

Referenced by changeParameters().

int Ogen::classifyPoints ( CompositeGrid &  cg, realSerialArray &  invalidPoint, int &  numberOfInvalidPoints, const int &  level, CompositeGrid &  cg0  )

protected

References Overture::abort(), adjustBoundary(), adjustForNearbyBoundaries(), allowHangingInterpolation, assert, axis1, axis2, axis3, backupValues, backupValuesUsed, bb, MappedGrid::boundaryCondition(), MappedGrid::boundaryFlag(), buff, c, CompositeGridData::canInterpolate(), MappedGrid::center(), center, checkCanInterpolate(), checkForOneSided, Overture::checkMemoryUsage(), checkOverlappingGrid(), classifyHolesForHybrid, classifyRedundantPoints(), debug, MappedGrid::dimension(), MappedGrid::discretizationWidth(), display(), displayMask(), End, MappedGrid::extendedIndexRange(), MappedGrid::extendedRange(), FALSE, findBestGuess(), generateInterpolationArrays(), GET_LOCAL, Mapping::getBoundingBox(), getCPU(), getGhostIndex(), getIndex(), ParallelUtility::getLocalArrayBounds(), getLocalArrayWithGhostBoundaries(), MappingRC::getMapping(), ParallelUtility::getMaxValue(), ParallelUtility::getMinValue(), ParallelUtility::getMinValues(), MappingRC::getName(), MappedGrid::getRectangularGridParameters(), ParallelUtility::getSum(), MappedGrid::gridIndexRange(), GenericGridCollection::gridNumber, i2, ia, improveQuality(), improveQualityOfInterpolation, info, interpolateAll(), interpolateMixedBoundary(), CompositeGrid::interpolationIsImplicit, CompositeGrid::interpolationStartEndIndex, Mapping::intersects(), CompositeGrid::inverseCoordinates, CompositeGrid::inverseGrid, Mapping::inverseMap(), Mapping::inverseMapS(), MappedGrid::isAllCellCentered(), MappedGrid::ISdiscretizationPoint, MappedGrid::ISinteriorBoundaryPoint, MappedGrid::ISinterpolationPoint, isNew, MappedGrid::isRectangular(), lastChanceInterpolation(), logFile, makeAdjustmentsForNearbyBoundaries, MappedGrid::mapping(), Mapping::mappingName, markMaskAtGhost(), markPointsNeededForInterpolation(), mask, MappedGrid::mask(), max(), CompositeGrid::mayInterpolate, min(), minimizeTheOverlap, MappedGrid::mixedPhysicalInterpolationBoundary, myid, NULL, Overture::nullIntArray(), nullRange, Overture::nullRealArray(), GenericGridCollection::numberOfBaseGrids(), GenericGridCollection::numberOfComponentGrids(), GridCollection::numberOfDimensions(), MappedGrid::numberOfGhostPoints(), GenericGridCollection::numberOfGrids(), CompositeGrid::numberOfInterpolationPoints, numberOfMixedBoundaries, intMappedGridFunction::periodicUpdate(), plogFile, plot(), printF(), Overture::printMemoryUsage(), ps, r, R, rBound, CompositeGrid::rcData, sPrintF(), Start, MappedGrid::THEcenter, MappedGrid::THEvertex, timeAllInterpolation, timeImproperInterpolation, timeImproveQuality, timeProperInterpolation, timeRemoveRedundant, totalTime, TRUE, unmarkBoundaryInterpolationPoints(), unmarkInterpolationPoints(), CompositeGrid::update(), updateCanInterpolate(), useBoundaryAdjustment, MappedGrid::USESbackupRules, x, and XC.

Referenced by computeOverlap().

int Ogen::classifyRedundantPoints ( CompositeGrid &  cg, const int &  grid, const int &  level, CompositeGrid &  cg0  )

protected

References MappedGrid::boundaryFlag(), buff, canDiscretize(), debug, displayMask(), End, extendedGridIndexRange(), FOR_3D, GET_LOCAL, getIndex(), ParallelUtility::getLocalArrayBounds(), MappedGrid::gridIndexRange(), i2, MappedGrid::ISdiscretizationPoint, MappedGrid::ISinteriorBoundaryPoint, MappedGrid::ISinterpolationPoint, isNeededForDiscretization(), isNeededForMultigridRestriction(), logFile, MASK, MappedGrid::mask(), MappedGrid::mixedPhysicalInterpolationBoundary, MappedGrid::numberOfDimensions(), CompositeGrid::numberOfInterpolationPoints, GenericGridCollection::numberOfMultigridLevels(), intMappedGridFunction::periodicUpdate(), sPrintF(), and Start.

Referenced by classifyPoints().

real Ogen::computeInterpolationQuality ( CompositeGrid &  cg, const int &  grid, const int &  i1, const int &  i2, const int &  i3, real &  qForward, real &  qReverse  )

protected

References assert, axis1, axis3, c, fabs(), MappedGrid::gridSpacing(), CompositeGrid::inverseCoordinates, CompositeGrid::inverseGrid, Mapping::inverseMap(), MappedGrid::isAllCellCentered(), max(), min(), GenericGridCollection::numberOfBaseGrids(), GenericGridCollection::numberOfComponentGrids(), GridCollection::numberOfDimensions(), q, REAL_MIN, rx, SQRT, TRUE, MappedGrid::vertex(), XR, and XR2.

Referenced by improveQuality().

int Ogen::computeInterpolationStencil ( CompositeGrid &  cg, const int &  grid, const int &  gridI, const real  r[3], int  stencil[3][2], bool  useOneSidedAtBoundaries = true, bool  useOddInterpolationWidth = false  )

protected

References MappedGrid::boundaryCondition(), End, MappedGrid::extendedIndexRange(), MappedGrid::gridSpacing(), MappedGrid::indexRange(), CompositeGrid::interpolationWidth, MappedGrid::isCellCentered(), MappedGrid::isPeriodic(), GridCollection::numberOfDimensions(), and Start.

Referenced by lastChanceInterpolation(), movingUpdate(), movingUpdateNew(), and updateRefinementFillInterpolationData().

int Ogen::computeOverlap ( CompositeGrid &  cg, CompositeGrid &  cgOld, const int &  level = 0, const bool &  movingGrids = FALSE, const IntegerArray &  hasMoved = Overture::nullIntArray()  )

protected

References Overture::abort(), abortOnAlgorithmFailure, abs(), assert, aString, checkFile, checkInterpolationOnBoundaries(), Overture::checkMemoryUsage(), checkOverlappingGrid(), checkParallelGhostWidth(), classifyPoints(), cutHoles(), cutHolesNew(), cutHolesNewer(), debug, dim, doubleCheckInterpolation, extendedGridRange(), FOR_3D, fPrintF(), generateInterpolationArrays(), GET_LOCAL_CONST, getCPU(), Overture::getCurrentMemoryUsage(), getIndex(), ParallelUtility::getLocalArrayBounds(), Overture::getMaximumMemoryUsage(), ParallelUtility::getMaxValue(), ParallelUtility::getMinValue(), ParallelUtility::getSum(), GI_PLOT_INTERPOLATION_POINTS, MappingInformation::graphXInterface, holeCuttingOption, i2, incrementalHoleSweep, info, isMovingGridProblem, isNew, logFile, Mapping::mappingName, mask, MASK, max(), CompositeGrid::multigridLevel, NULL, GenericGridCollection::numberOfBaseGrids(), GenericGridCollection::numberOfComponentGrids(), numberOfHolePoints, CompositeGrid::numberOfInterpolationPoints, GenericGridCollection::numberOfMultigridLevels(), numberOfOrphanPoints, CompositeGrid::numberOfPossibleMultigridLevels(), orphanPoint, outputGridOnFailure, plot(), plotHolePoints, printF(), Overture::printMemoryUsage(), ps, psp, removeExteriorPointsNew(), resetGrid(), saveGridToAFile(), GraphicsParameters::set(), SQR, GenericGraphicsInterface::stopReadingCommandFile(), sweepOutHolePoints(), timeAllInterpolation, timeCutHoles, timeImproperInterpolation, timeImproveQuality, timeInterpolateBoundaries, timeProperInterpolation, timeRemoveExteriorPoints, timeRemoveRedundant, timeUpdateGeometry, totalTime, TRUE, updateOverlap(), and GridCollection::USESbackupRules.

Referenced by updateOverlap().

int Ogen::conformToCmpgrd ( CompositeGrid &  cg )

protected

References c, MappedGrid::extendedIndexRange(), getIndex(), i2, CompositeGrid::inverseGrid, MappedGrid::ISinterpolationPoint, mask, MappedGrid::mask(), CompositeGrid::multigridLevel, GenericGridCollection::numberOfComponentGrids(), and GenericGridCollection::numberOfMultigridLevels().

int Ogen::countCrossingsWithRealBoundary ( CompositeGrid &  cg, const realArray &  x, IntegerArray &  crossings  )

protected

References Mapping::approximateGlobalInverse, axis1, axis2, axis3, MappedGrid::boundaryCondition(), debug, Mapping::derivativePeriodic, End, fabs(), FALSE, MappingRC::getMapping(), Mapping::getTypeOfCoordinateSingularity(), gridScale, i2, info, MappedGrid::ISdiscretizationPoint, MappedGrid::ISinterpolationPoint, MappedGrid::isPeriodic(), MappedGrid::mapping(), mask, MappedGrid::mask(), mask1, mask2, maskRatio, max(), CompositeGrid::mayCutHoles, GenericGridCollection::numberOfBaseGrids(), GridCollection::numberOfDimensions(), Mapping::polarSingularity, R, REAL_EPSILON, Start, and TRUE.

Referenced by checkCrossings(), and removeExteriorPoints().

int Ogen::cutHoles ( CompositeGrid &  cg )

protected

References abs(), adjustBoundary(), Mapping::approximateGlobalInverse, assert, axis1, axis2, axis3, ApproximateGlobalInverse::binarySearchOverBoundary(), Mapping::bogus, MappedGrid::boundaryCondition(), boundaryEps, MappedGrid::boundaryFlag(), boundingBox, MappedGrid::center(), center, checkHoleCutting(), debug, delta, MappedGrid::dimension(), display(), dr, dx, End, extendedGridIndexRange(), MappedGrid::extendedIndexRange(), extendedIndexRange2, fabs(), FALSE, FOR_3D, Mapping::functionPeriodic, getBoundaryIndex(), Mapping::getBoundingBox(), getCPU(), getIndex(), MappingRC::getMapping(), MappingRC::getName(), MappedGrid::getName(), MappedGrid::getRectangularGridParameters(), Mapping::getTopology(), Mapping::getTypeOfCoordinateSingularity(), MappedGrid::gridIndexRange(), MappedGrid::gridSpacing(), holeMarker, holeOffset, holePoint, i2, ia, MappedGrid::indexRange(), indexRange2, info, Mapping::intersects(), CompositeGrid::inverseCoordinates, CompositeGrid::inverseGrid, Mapping::inverseMap(), Mapping::inverseMapC(), MappedGrid::isAllCellCentered(), MappedGrid::ISinterpolationPoint, isNew, ISnonCuttingBoundaryPoint, MappedGrid::isPeriodic(), MappedGrid::isRectangular(), logFile, manualHole, Mapping::mapC(), MappedGrid::mapping(), Mapping::mappingName, mask, MappedGrid::mask(), mask2, max(), CompositeGrid::maximumHoleCuttingDistance, CompositeGrid::mayCutHoles, CompositeGrid::mayInterpolate, min(), MappedGrid::mixedPhysicalInterpolationBoundary, nonCuttingBoundaryPoints, normal, GenericGridCollection::numberOfBaseGrids(), GridCollection::numberOfDimensions(), MappedGrid::numberOfDimensions(), numberOfHolePoints, numberOfManualHoles, numberOfNonCuttingBoundaries, numberOfOrphanPoints, orphanPoint, intMappedGridFunction::periodicUpdate(), plotOrphanPoints, Mapping::polarSingularity, printF(), projectToBoundary(), r, R, rBound, REAL_MAX, REAL_MIN, share, MappedGrid::sharedBoundaryFlag(), CompositeGrid::sharedSidesMayCutHoles, SQR, SQRT, Start, timeCutHoles, Mapping::topologyIsPartiallyPeriodic, Mapping::topologyMask(), totalTime, TRUE, useBoundaryAdjustment, MappedGrid::vertex(), MappedGrid::vertexBoundaryNormal(), MappedGrid::vertexDerivative(), x, XC, XC2, XR, xr, and XV.

Referenced by computeOverlap().

int Ogen::cutHolesNew ( CompositeGrid &  cg )

protected

References Overture::abort(), abs(), adjustBoundary(), Mapping::approximateGlobalInverse, assert, axis1, axis2, axis3, ApproximateGlobalInverse::binarySearchOverBoundary(), Mapping::bogus, MappedGrid::boundaryCondition(), boundaryEps, MappedGrid::boundaryFlag(), boundingBox, MappedGrid::center(), center, checkHoleCutting(), Overture::checkMemoryUsage(), debug, delta, MappedGrid::dimension(), display(), dr, dx, End, explicitHoleCutting(), extendedGridIndexRange(), MappedGrid::extendedIndexRange(), extendedIndexRange2, fabs(), FALSE, FOR_3, FOR_3D, Mapping::functionPeriodic, GET_LOCAL, GET_LOCAL_CONST, getBoundaryIndex(), Mapping::getBoundingBox(), getCPU(), getHoleWidth(), getIndex(), ListOfMappingRC::getLength(), ParallelUtility::getLocalArrayBounds(), getLocalArrayWithGhostBoundaries(), MappingRC::getMapping(), MappingRC::getName(), MappedGrid::getName(), MappedGrid::getRectangularGridParameters(), Mapping::getTopology(), Mapping::getTypeOfCoordinateSingularity(), MappedGrid::gridIndexRange(), MappedGrid::gridSpacing(), gridSpacing2, holeCutters, holeMarker, holePoint, i2, ia, MappedGrid::indexRange(), indexRange2, info, Mapping::intersects(), CompositeGrid::inverseCoordinates, CompositeGrid::inverseGrid, Mapping::inverseMap(), Mapping::inverseMapC(), Mapping::inverseMapS(), MappedGrid::isAllCellCentered(), MappedGrid::ISinterpolationPoint, isNew, ISnonCuttingBoundaryPoint, MappedGrid::isPeriodic(), MappedGrid::isRectangular(), localIndexBounds2, manualHole, Mapping::mapC(), Mapping::mapGrid(), Mapping::mapGridS(), MappedGrid::mapping(), Mapping::mappingName, Mapping::mapS(), mask, MappedGrid::mask(), mask2, max(), CompositeGrid::maximumHoleCuttingDistance, CompositeGrid::mayCutHoles, CompositeGrid::mayInterpolate, min(), MappedGrid::mixedPhysicalInterpolationBoundary, myid, nonCuttingBoundaryPoints, normal, NULL, Overture::nullIntArray(), Overture::nullRealArray(), GenericGridCollection::numberOfBaseGrids(), GridCollection::numberOfDimensions(), MappedGrid::numberOfDimensions(), numberOfHolePoints, numberOfManualHoles, numberOfNonCuttingBoundaries, numberOfOrphanPoints, orphanPoint, intMappedGridFunction::periodicUpdate(), plogFile, plotOrphanPoints, Mapping::polarSingularity, printF(), pxBoundary, r, R, RB, rBound, REAL_MAX, REAL_MIN, share, MappedGrid::sharedBoundaryFlag(), CompositeGrid::sharedSidesMayCutHoles, SQR, SQRT, Start, timeCheckHoleCutting, timeCutHoles, Mapping::topologyIsPartiallyPeriodic, Mapping::topologyMask(), totalTime, TRUE, useBoundaryAdjustment, MappedGrid::vertex(), MappedGrid::vertexBoundaryNormal(), MappedGrid::vertexBoundaryNormalArray(), MappedGrid::vertexDerivative(), x, xBoundary, XC, XC2, XR, xr, and XV.

Referenced by computeOverlap().

int Ogen::cutHolesNewer ( CompositeGrid &  cg )

protected

References Overture::abort(), abs(), adjustBoundary(), Mapping::approximateGlobalInverse, assert, axis1, axis2, axis3, ApproximateGlobalInverse::binarySearchOverBoundary(), Mapping::bogus, MappedGrid::boundaryCondition(), boundaryEps, MappedGrid::boundaryFlag(), boundingBox, MappedGrid::center(), center, checkHoleCutting(), Overture::checkMemoryUsage(), debug, delta, MappedGrid::dimension(), display(), displayMask(), dr, dx, End, extendedGridIndexRange(), MappedGrid::extendedIndexRange(), extendedIndexRange2, fabs(), FALSE, fmod(), FOR_3, FOR_3D, Mapping::functionPeriodic, GET_LOCAL, GET_LOCAL_CONST, getBoundaryIndex(), getCPU(), getHoleWidth(), getIndex(), ParallelUtility::getLocalArrayBounds(), getLocalArrayWithGhostBoundaries(), MappingRC::getMapping(), MappingRC::getName(), MappedGrid::getName(), MappedGrid::getRectangularGridParameters(), Mapping::getTopology(), Mapping::getTypeOfCoordinateSingularity(), MappedGrid::gridIndexRange(), MappedGrid::gridSpacing(), gridSpacing2, holeMarker, holePoint, i2, ia, MappedGrid::indexRange(), indexRange2, info, Mapping::intersects(), CompositeGrid::inverseCoordinates, CompositeGrid::inverseGrid, Mapping::inverseMap(), Mapping::inverseMapC(), Mapping::inverseMapS(), MappedGrid::isAllCellCentered(), MappedGrid::ISinterpolationPoint, isNew, ISnonCuttingBoundaryPoint, isPeriodic, MappedGrid::isPeriodic(), MappedGrid::isRectangular(), l2Norm(), MappedGrid::localBoundingBox(), localIndexBounds2, logFile, manualHole, Mapping::mapC(), Mapping::mapGrid(), Mapping::mapGridS(), MappedGrid::mapping(), Mapping::mappingName, Mapping::mapS(), mask, MappedGrid::mask(), mask2, max(), CompositeGrid::maximumHoleCuttingDistance, CompositeGrid::mayCutHoles, CompositeGrid::mayInterpolate, min(), MappedGrid::mixedPhysicalInterpolationBoundary, myid, nonCuttingBoundaryPoints, normal, NULL, Overture::nullIntArray(), Overture::nullRealArray(), GenericGridCollection::numberOfBaseGrids(), GridCollection::numberOfDimensions(), MappedGrid::numberOfDimensions(), numberOfHolePoints, numberOfManualHoles, numberOfNonCuttingBoundaries, numberOfOrphanPoints, orphanPoint, intMappedGridFunction::periodicUpdate(), plogFile, plotOrphanPoints, Mapping::polarSingularity, printF(), pxBoundary, r, R, RB, rBound, REAL_MAX, REAL_MIN, share, MappedGrid::sharedBoundaryFlag(), CompositeGrid::sharedSidesMayCutHoles, sPrintF(), SQR, SQRT, Start, timeCheckHoleCutting, timeCutHoles, Mapping::topologyIsPartiallyPeriodic, Mapping::topologyMask(), totalTime, TRUE, useBoundaryAdjustment, Mapping::usesDistributedInverse(), MappedGrid::vertex(), MappedGrid::vertexBoundaryNormal(), MappedGrid::vertexBoundaryNormalArray(), MappedGrid::vertexDerivative(), x, xBoundary, XC, XC2, XR, xr, and XV.

Referenced by computeOverlap().

int Ogen::determineBoundaryPointsToAdjust ( CompositeGrid &  cg, const int  grid, const int  grid2, IntegerArray &  sidesShare, const int  ks1, const int  kd1, const int  ks2, const int  kd2, BoundaryAdjustment &  bA, bool &  first, bool &  needAdjustment, int  numberOfDirectionsAdjusted, bool &  directionAdjusted, bool &  wasAdjusted, Range &  R, IntegerArray &  ia, IntegerArray &  ok, const int  it, real  shareTol[3][2], RealArray &  r, RealArray &  r2, RealArray &  r3, RealArray &  rOk, RealArray &  xx, RealArray &  x2, RealArray &  x3  )

protected

Determine the points to adjust on a shared boundary when interpolating points from grid side (ks1,kd1)

References abs(), adjustBoundary(), axis3, BoundaryAdjustment::boundaryAdjustment(), MappedGrid::boundaryCondition(), boundaryEps, BoundaryAdjustment::computedGeometry, debug, delta1, delta2, MappedGrid::dimension(), display(), BoundaryAdjustment::doNotShare, End, equals(), evaluate(), fabs(), MappingRC::getMapping(), ParallelUtility::getMaxValue(), Mapping::getName(), MappedGrid::getName(), getNormal(), getSharedBoundaryTolerances(), Mapping::getSignForJacobian(), MappedGrid::gridIndexRange(), MappedGrid::gridSpacing(), MappedGrid::indexRange(), Mapping::intersects(), Mapping::inverseMapC(), Mapping::inverseMapCS(), MappedGrid::isAllVertexCentered(), LogicalFalse, Mapping::map(), MappedGrid::mapping(), Mapping::mappingName, Mapping::mapS(), max(), min(), Overture::nullIntArray(), Overture::nullRealArray(), GridCollection::numberOfDimensions(), plogFile, r, BoundaryAdjustment::share, BoundaryAdjustment::shareButNoAdjustmentNeeded, MappedGrid::sharedBoundaryFlag(), BoundaryAdjustment::sidesShare(), SQR, SQRT, Start, THEmask, MappedGrid::vertexBoundaryNormal(), and MappedGrid::vertexBoundaryNormalArray().

Referenced by updateBoundaryAdjustment().

int Ogen::determineMinimalIndexRange ( CompositeGrid &  cg )

protected

References debug, dimension, End, GET_LOCAL_CONST, ParallelUtility::getMaxValue(), ParallelUtility::getMinValue(), ia, indexRange, Mapping::mappingName, mask, max(), min(), GenericGridCollection::numberOfBaseGrids(), GridCollection::numberOfDimensions(), printF(), R, and Start.

Referenced by updateOverlap().

int Ogen::displayCompositeGridParameters ( CompositeGrid &  cg, FILE *  file = stdout  )

static

Output composite grid parameters such as discretization width, interpolation width etc.

References boundaryCondition, discretizationWidth, End, fPrintF(), CompositeGrid::interpolationIsImplicit, CompositeGrid::interpolationWidth, Mapping::mappingName, CompositeGrid::mayCutHoles, GenericGridCollection::numberOfComponentGrids(), GridCollection::numberOfDimensions(), and Start.

Referenced by changeParameters().

int Ogen::estimateSharedBoundaryTolerance ( CompositeGrid &  cg )

protected

Referenced by checkInterpolationOnBoundaries().

int Ogen::explicitHoleCutting ( CompositeGrid &  cg )

protected

Cut holes with user defined explicit hole cutters.

References boundingBox, cutterBoundingBox, debug, fabs(), FOR_3D, Mapping::getBoundingBox(), getIndex(), ListOfMappingRC::getLength(), ParallelUtility::getLocalArrayBounds(), MappingRC::getMapping(), Mapping::getName(), MappedGrid::getName(), MappedGrid::getRectangularGridParameters(), MappedGrid::gridIndexRange(), holeCutters, holePoint, i2, ia, IA, Mapping::intersects(), Mapping::inverseMapS(), MappedGrid::isRectangular(), MappedGrid::mapping(), Mapping::mappingName, MASK, MappedGrid::mask(), max(), NULL, GenericGridCollection::numberOfBaseGrids(), GridCollection::numberOfDimensions(), MappedGrid::numberOfDimensions(), numberOfHolePoints, OV_GET_SERIAL_ARRAY_CONDITIONAL, OV_GET_SERIAL_ARRAY_CONST, plogFile, printF(), R, RA, ra, MappedGrid::vertex(), XA, and XAB.

Referenced by cutHolesNew().

int Ogen::findBestGuess ( CompositeGrid &  cg, const int &  grid, const int &  numberToCheck, intSerialArray &  ia, realSerialArray &  x, realSerialArray &  r, realSerialArray &  rI, intSerialArray &  inverseGrid, const realSerialArray &  center  )

protected

References assert, c, fabs(), MappingRC::getName(), Mapping::getName(), MappedGrid::getRectangularGridParameters(), MappedGrid::gridIndexRange(), info, Mapping::intersects(), Mapping::inverseMap(), Mapping::inverseMapS(), MappedGrid::isAllCellCentered(), MappedGrid::isRectangular(), MappedGrid::mapping(), Mapping::mappingName, max(), GenericGridCollection::numberOfBaseGrids(), GenericGridCollection::numberOfComponentGrids(), GridCollection::numberOfDimensions(), MappedGrid::numberOfDimensions(), r, R, and XC.

Referenced by classifyPoints().

int Ogen::findClosestBoundaryPoint ( MappedGrid &  mg, real *  x, int *  iv, int *  ivb, int &  sideb, int &  axisb  )

protected

Find the closest boundary point – use x-distance!

References MappedGrid::boundaryCondition(), MappedGrid::center(), center, MappedGrid::dimension(), fabs(), MappingRC::getMapping(), Mapping::getTypeOfCoordinateSingularity(), MappedGrid::gridIndexRange(), MappedGrid::mapping(), max(), min(), MappedGrid::numberOfDimensions(), Mapping::polarSingularity, and REAL_MAX.

Referenced by interpolateAPoint(), and queryAPoint().

int Ogen::findTrueBoundary ( CompositeGrid &  cg )

protected

References axis1, axis2, axis3, MappedGrid::boundaryCondition(), End, MappedGrid::extendedIndexRange(), getBoundaryIndex(), getCPU(), MappingRC::getName(), MappingRC::getTypeOfCoordinateSingularity(), i2, info, MappedGrid::ISdiscretizationPoint, MappedGrid::isPeriodic(), MappedGrid::mapping(), Mapping::mappingName, mask, MappedGrid::mask(), GenericGridCollection::numberOfBaseGrids(), GridCollection::numberOfDimensions(), Mapping::polarSingularity, Start, timeFindTrueBoundary, and totalTime.

int Ogen::generateInterpolationArrays ( CompositeGrid &  cg, const IntegerArray &  numberOfInterpolationPoints, intSerialArray *  iInterp  )

protected

References Overture::abort(), abs(), adjustSizeMacro, assert, aString, backupValues, backupValuesUsed, MappedGrid::boundaryCondition(), buff, c, GenericGridCollectionData::computedGeometry, GenericGridCollection::COMPUTEnothing, display(), End, MappedGrid::extendedIndexRange(), MappedGrid::extendedRange(), GET_LOCAL, getIndex(), ParallelUtility::getLocalArrayBounds(), ParallelUtility::getMaxValues(), ParallelUtility::getSum(), MappedGrid::gridSpacing(), i2, ia, MappedGrid::indexRange(), info, CompositeGrid::interpolationCoordinates, interpolationCoordinates, CompositeGridData::interpolationCoordinatesLocal, CompositeGrid::interpolationIsImplicit, CompositeGrid::interpolationPoint, CompositeGridData::interpolationPointLocal, CompositeGrid::interpolationStartEndIndex, CompositeGrid::interpolationWidth, CompositeGrid::interpoleeGrid, interpoleeGrid, CompositeGridData::interpoleeGridLocal, CompositeGrid::interpoleeLocation, interpoleeLocation, CompositeGridData::interpoleeLocationLocal, CompositeGrid::inverseCoordinates, CompositeGrid::inverseGrid, MappedGrid::isCellCentered(), MappedGrid::ISinterpolationPoint, MappedGrid::isPeriodic(), CompositeGridData::localInterpolationDataForAll, CompositeGridData::localInterpolationDataState, mask, MappedGrid::mask(), GenericGridCollection::numberOfBaseGrids(), GridCollection::numberOfDimensions(), GenericGridCollection::numberOfGrids(), CompositeGrid::numberOfInterpolationPoints, CompositeGridData::numberOfInterpolationPointsLocal, printF(), R, saveGridToAFile(), sPrintF(), Start, CompositeGrid::THEinterpolationCoordinates, CompositeGrid::THEinterpolationPoint, CompositeGrid::THEinterpoleeGrid, CompositeGrid::THEinterpoleeLocation, GridCollection::THEmask, CompositeGrid::update(), MappedGrid::USESbackupRules, CompositeGrid::variableInterpolationWidth, variableInterpolationWidth, and CompositeGridData::variableInterpolationWidthLocal.

Referenced by classifyPoints(), computeOverlap(), movingUpdate(), movingUpdateNew(), and queryAPoint().

int Ogen::getAdjustmentVectors ( CompositeGrid &  cg, BoundaryAdjustment &  bA, int  grid, int  grid2, bool &  needAdjustment, int  numberOfPoints, int  it, int  ks1, int  kd1, int  ks2, int  kd2, Index  Iv[3], RealArray &  x1  )

protected

References BoundaryAdjustment::acrossGrid(), debug, display(), dr, FOR_3D, FOR_3IJD, GET_LOCAL_CONST, ParallelUtility::getLocalArrayBounds(), getLocalArrayWithGhostBoundaries(), MappingRC::getMapping(), MappedGrid::getName(), MappedGrid::getRectangularGridParameters(), MappedGrid::gridIndexRange(), MappedGrid::gridSpacing(), i2, MappedGrid::isAllCellCentered(), MappedGrid::isAllVertexCentered(), MappedGrid::isRectangular(), logFile, Mapping::mapGrid(), Mapping::mapGridS(), MappedGrid::mapping(), MappedGrid::mask(), mask1, max(), min(), GenericGridCollection::numberOfBaseGrids(), GenericGridCollection::numberOfComponentGrids(), GridCollection::numberOfDimensions(), MappedGrid::numberOfDimensions(), BoundaryAdjustment::oppositeBoundary(), oppositeBoundaryIndex(), plogFile, RB, REAL_EPSILON, MappedGrid::vertex(), and XV1.

Referenced by updateBoundaryAdjustment().

int Ogen::getHoleWidth ( CompositeGrid &  cg, MappedGrid &  g2, int  pHoleMarker[3], IntegerArray &  holeCenter, IntegerArray &  holeMask, IntegerArray &  holeWidth, RealArray &  r, RealArray &  x, const int *  pIndexRange2, const int *  pExtendedIndexRange2, const int *  plocalIndexBounds2, int  iv[3], int  jv[3], int  jpv[3], bool  isPeriodic2[3], bool  isPeriodic2p[3], const Index  Iv[3], const int &  grid, const int &  grid2, int &  ib, int &  ib2, int &  skipThisPoint, int &  initialPoint, const int &  numberOfDimensions, const int &  axisp1, const int &  axisp2, const real &  cellCenterOffset, const int &  maximumHoleWidth, int &  numberOfHoleWidthWarnings  )

protected

References abs(), assert, dr, End, fabs(), MappedGrid::gridSpacing(), gridSpacing2, holeMarker, holeOffset, i2, indexRange2, info, localIndexBounds2, max(), min(), myid, plogFile, projectToParameterBoundary(), r, and Start.

Referenced by cutHolesNew(), and cutHolesNewer().

int Ogen::getNormal ( const int &  numberOfDimensions, const int &  side, const int &  axis, const RealArray &  xr, real  signForJacobian, RealArray &  normal  )

protected

References max(), REAL_MIN, and SQR.

Referenced by checkInterpolationOnBoundaries(), and determineBoundaryPointsToAdjust().

void Ogen::getSharedBoundaryTolerances ( CompositeGrid &  cg, int  grid1, int  side1, int  dir1, int  grid2, int  side2, int  dir2, real &  rTol, real &  xTol, real &  nTol  ) const

protected

References REAL_MAX.

Referenced by determineBoundaryPointsToAdjust().

int Ogen::improveQuality ( CompositeGrid &  cg, const int &  grid, RealArray &  removedPointBound  )

protected

References assert, axis1, axis2, axis3, c, computeInterpolationQuality(), debug, End, MappedGrid::extendedIndexRange(), FALSE, getIndex(), MappingRC::getName(), MappedGrid::gridSpacing(), i2, ia, MappedGrid::indexRange(), info, CompositeGrid::interpolationWidth, CompositeGrid::inverseGrid, MappedGrid::ISinterpolationPoint, isNeededForDiscretization(), isOnInterpolationBoundary(), MappedGrid::mapping(), Mapping::mappingName, mask, MappedGrid::mask(), max(), min(), GenericGridCollection::numberOfBaseGrids(), GridCollection::numberOfDimensions(), printF(), q, qualityBound, r, R, REAL_MAX, rx, Start, and TRUE.

Referenced by classifyPoints().

int Ogen::initialize ( )

protected

References abortOnAlgorithmFailure, allowBackupRules, allowHangingInterpolation, backupValues, boundaryEps, checkFile, checkForOneSided, classifyHolesForHybrid, computeGeometryForMovingGrids, debug, defaultInterpolationIsImplicit, defaultNumberOfGhostPoints, doubleCheckInterpolation, fPrintF(), holeCutters, holeCuttingOption, improveQualityOfInterpolation, incrementalHoleSweep, info, isMovingGridProblem, loadBalanceGrids, logFile, makeAdjustmentsForNearbyBoundaries, maskRatio, max(), maximumAngleDifferenceForNormalsOnSharedBoundaries, maximumNumberOfPointsToInvertAtOneTime, minimizeTheOverlap, myid, NULL, numberOfArrays, numberOfHolePoints, numberOfManualHoles, numberOfManualSharedBoundaries, numberOfMixedBoundaries, numberOfNonCuttingBoundaries, numberOfOrphanPoints, numberOfSharedBoundaryTolerances, outputGridOnFailure, plogFile, plotExplicitHoleCutters, plotTitles, printF(), qualityBound, sPrintF(), timeAllInterpolation, timeCheckHoleCutting, timeCutHoles, timeFindTrueBoundary, timeImproperInterpolation, timeImproveQuality, timeInterpolateBoundaries, timePreInterpolate, timeProperInterpolation, timeRemoveExteriorPoints, timeRemoveRedundant, timeUpdateGeometry, totalTime, useBoundaryAdjustment, useLocalBoundingBoxes, and useNewMovingUpdate.

Referenced by Ogen().

int Ogen::interpolateAll ( CompositeGrid &  cg, IntegerArray &  numberOfInterpolationPoints, CompositeGrid &  cg0  )

protected

References adjustBoundary(), axis1, axis2, axis3, MappedGrid::boundaryFlag(), GridCollection::boundingBox, boundingBox, c, CompositeGridData::canInterpolate(), MappedGrid::center(), center, checkCanInterpolate(), checkForOneSided, Overture::checkMemoryUsage(), debug, display(), End, MappedGrid::extendedIndexRange(), FALSE, GET_LOCAL, getIndex(), ParallelUtility::getLocalArrayBounds(), getLocalArrayWithGhostBoundaries(), MappingRC::getMapping(), ParallelUtility::getMaxValue(), MappingRC::getName(), Mapping::getName(), MappedGrid::getName(), MappedGrid::getRectangularGridParameters(), ParallelUtility::getSum(), Mapping::getTypeOfCoordinateSingularity(), MappedGrid::gridIndexRange(), GenericGridCollection::gridNumber, i2, ia, improveQualityOfInterpolation, info, CompositeGrid::inverseCoordinates, CompositeGrid::inverseGrid, Mapping::inverseMap(), Mapping::inverseMapS(), MappedGrid::isAllCellCentered(), MappedGrid::isAllVertexCentered(), MappedGrid::ISdiscretizationPoint, MappedGrid::ISinteriorBoundaryPoint, MappedGrid::ISinterpolationPoint, isNew, MappedGrid::isPeriodic(), MappedGrid::isRectangular(), MappedGrid::mapping(), Mapping::mappingName, mask, MappedGrid::mask(), max(), maximumNumberOfPointsToInvertAtOneTime, CompositeGrid::mayInterpolate, min(), MappedGrid::mixedPhysicalInterpolationBoundary, Overture::nullIntArray(), Overture::nullRealArray(), GenericGridCollection::numberOfBaseGrids(), GridCollection::numberOfDimensions(), OV_ABORT, intMappedGridFunction::periodicUpdate(), plogFile, Mapping::polarSingularity, printF(), r, R, R0, CompositeGrid::rcData, S, sPrintF(), Start, TRUE, useBoundaryAdjustment, x, XC, XC0, XC1, and XC2.

Referenced by classifyPoints().

bool Ogen::interpolateAPoint ( CompositeGrid &  cg, int  grid, int  iv[3], bool  interpolatePoint, bool  checkInterpolationCoords, bool  checkBoundaryPoint, int  infoLevel  )

protected

Try to interpolate a point If interpolatePoint==true then attempt to interpolate the point. Return true if the point was interpolated.

Parameters

cg	(input) : CompositeGrid
grid	(input) : point to interpolate is on this grid.
iv[3]	(input) : index of the point to interpolate.
interpolatePoint	(input) : if true and the point (grid,iv) can interpolate from another donor grid then adjust the mask, inverseGrid and inverseCoordinates to indicate this.
checkInterpolationCoords	(input) :
checkBoundaryPoint	(input) : if true then project the point (grid,iv) onto the nearest boundary before attempting to interpolate. Also check the normals between the interpolation point and donor.
infoLevel	(input) : bit flag, infoLevel = 0 + 1 + 2 to output additional information.

References adjustBoundary(), Mapping::approximateGlobalInverse, assert, axis1, axis2, axis3, CompositeGridData::canInterpolate(), MappedGrid::center(), center, checkCanInterpolate(), checkForOneSided, debug, Mapping::debug, MappedGrid::dimension(), dr, dx, fabs(), findClosestBoundaryPoint(), Mapping::findNearestGridPoint(), MappingRC::getMapping(), Mapping::getName(), MappedGrid::getName(), MappedGrid::getRectangularGridParameters(), MappedGrid::gridIndexRange(), GenericGridCollection::gridNumber, MappedGrid::gridSpacing(), i2, ia, CompositeGrid::interpolationWidth, Mapping::intersects(), CompositeGrid::inverseCoordinates, CompositeGrid::inverseGrid, Mapping::inverseMapS(), MappedGrid::isAllCellCentered(), MappedGrid::ISinterpolationPoint, MappedGrid::isRectangular(), MappedGrid::mapping(), Mapping::mappingName, Mapping::mapS(), MappedGrid::mask(), mask2, max(), CompositeGrid::mayInterpolate, myid, normal, NULL, GenericGridCollection::numberOfComponentGrids(), GridCollection::numberOfDimensions(), MappedGrid::numberOfDimensions(), OV_GET_SERIAL_ARRAY, OV_GET_SERIAL_ARRAY_CONDITIONAL, OV_GET_SERIAL_ARRAY_CONST, printF(), r, CompositeGrid::rcData, REAL_EPSILON, REAL_MAX, rx, SQR, useBoundaryAdjustment, MappedGrid::vertex(), MappedGrid::vertexBoundaryNormal(), x, XC, and XC2.

Referenced by checkHoleCutting(), and queryAPoint().

int Ogen::interpolateMixedBoundary ( CompositeGrid &  cg, int  mixedBoundaryNumber  )

protected

References assert, MappedGrid::boundaryCondition(), Mapping::getGridDimensions(), MappingRC::getMapping(), MappedGrid::mapping(), mixedBoundary, GenericGridCollection::numberOfBaseGrids(), GenericGridCollection::numberOfComponentGrids(), GridCollection::numberOfDimensions(), CompositeGrid::numberOfInterpolationPoints, ReparameterizationTransform::restriction, Mapping::setBoundaryCondition(), ReparameterizationTransform::setBounds(), Mapping::setGridDimensions(), MappedGrid::THEvertex, MappedGrid::update(), and ComposeMapping::useDefaultMappingInverse().

Referenced by changeParameters(), checkInterpolationOnBoundaries(), and classifyPoints().

int Ogen::interpolateMixedBoundary ( CompositeGrid &  cg, int  mixedBoundaryNumber, int  side, int  axis, int  grid, MappedGrid &  g, int  grid2, MappedGrid &  g2, int  offset[3], real  rScale[3], real  rOffset[3]  )

protected

References assert, MappedGrid::boundaryCondition(), MappedGrid::boundaryFlag(), debug, display(), displayMask(), End, fabs(), getBoundaryIndex(), getGhostIndex(), MappingRC::getMapping(), MappedGrid::getName(), MappedGrid::gridIndexRange(), gridIndexRange, i2, ia, CompositeGrid::inverseCoordinates, CompositeGrid::inverseGrid, Mapping::inverseMap(), MappedGrid::ISdiscretizationPoint, MappedGrid::ISinteriorBoundaryPoint, MappedGrid::ISinterpolationPoint, ISnonCuttingBoundaryPoint, logFile, Mapping::map(), MappedGrid::mapping(), mask, max(), min(), mixedBoundary, mixedBoundaryValue, MappedGrid::mixedPhysicalInterpolationBoundary, GenericGridCollection::numberOfBaseGrids(), GenericGridCollection::numberOfComponentGrids(), GridCollection::numberOfDimensions(), MappedGrid::numberOfDimensions(), printF(), r, R, rBound, s, SQR, Start, MappedGrid::THEcenter, MappedGrid::THEvertex, MappedGrid::update(), MappedGrid::vertex(), and x.

int Ogen::interpolatePoints ( CompositeGrid &  cg, int  grid, int  numberToInterpolate, const IntegerArray &  ia, IntegerArray &  interpolates  )

protected

Attempt to interpolate a list of points. For points that could interpolate the interpolation data mask, inverseGrid and inverseCoordinates are changed.

Parameters

cg	(input) :
grid	(input) : points lie on this grid
numberToInterpolate	(input) : number of points in the list ia
ia(i,0:2)	(input) : index coordinates of the list of points
interpolates(i)	(output) : true if the point was interpolated.

References adjustBoundary(), assert, axis3, CompositeGridData::canInterpolate(), MappedGrid::center(), center, checkCanInterpolate(), checkForOneSided, debug, MappingRC::getMapping(), Mapping::getName(), MappedGrid::getName(), MappedGrid::getRectangularGridParameters(), ParallelUtility::getSum(), MappedGrid::gridIndexRange(), MappedGrid::gridSpacing(), i2, Mapping::intersects(), CompositeGrid::inverseCoordinates, CompositeGrid::inverseGrid, Mapping::inverseMap(), Mapping::inverseMapS(), MappedGrid::isAllCellCentered(), MappedGrid::ISinterpolationPoint, MappedGrid::isRectangular(), MappedGrid::mapping(), Mapping::mappingName, Mapping::mapS(), MappedGrid::mask(), CompositeGrid::mayInterpolate, GenericGridCollection::numberOfBaseGrids(), GridCollection::numberOfDimensions(), MappedGrid::numberOfDimensions(), OV_GET_SERIAL_ARRAY, OV_GET_SERIAL_ARRAY_CONDITIONAL, OV_GET_SERIAL_ARRAY_CONST, plogFile, printF(), r, R, CompositeGrid::rcData, useBoundaryAdjustment, x, and XVC.

Referenced by checkHoleCutting().

bool Ogen::isNeededForDiscretization ( MappedGrid &  g, const int  iv[3]  )

protected

References axis1, axis2, axis3, boundaryCondition, MappedGrid::boundaryCondition(), boundaryDiscretizationWidth, MappedGrid::boundaryDiscretizationWidth(), discretizationWidth, MappedGrid::discretizationWidth(), extendedIndexRange, MappedGrid::extendedIndexRange(), GET_LOCAL, iab, MappedGrid::ISdiscretizationPoint, isPeriodic, MappedGrid::isPeriodic(), mask, MappedGrid::mask(), and MappedGrid::numberOfDimensions().

Referenced by classifyRedundantPoints(), improveQuality(), markPointsNeededForInterpolation(), markPointsNeededForInterpolationNew(), and preInterpolateGrids().

bool Ogen::isNeededForMultigridRestriction ( CompositeGrid &  c, const int &  grid, const int &  l, const int  iv[3]  )

protected

References assert, axis1, axis2, axis3, iab, MappedGrid::indexRange(), CompositeGrid::interpolationIsAllImplicit(), MappedGrid::isCellCentered(), MappedGrid::ISdiscretizationPoint, MappedGrid::ISusedPoint, LogicalFalse, mask, max0(), min0(), CompositeGrid::multigridCoarseningRatio, CompositeGrid::multigridLevel, CompositeGrid::multigridRestrictionWidth, GridCollection::numberOfDimensions(), and TRUE.

Referenced by classifyRedundantPoints().

bool Ogen::isOnInterpolationBoundary ( MappedGrid &  g, const int  iv[3], const int &  width = 1  )

protected

References axis1, axis2, axis3, boundaryCondition, MappedGrid::boundaryCondition(), MappedGrid::boundaryDiscretizationWidth(), MappedGrid::discretizationWidth(), extendedIndexRange, MappedGrid::extendedIndexRange(), iab, isPeriodic, MappedGrid::isPeriodic(), mask, MappedGrid::mask(), and MappedGrid::numberOfDimensions().

Referenced by improveQuality(), and markPointsReallyNeededForInterpolation().

int Ogen::lastChanceInterpolation ( CompositeGrid &  cg, CompositeGrid &  cg0, const int &  grid, const IntegerArray &  ia, const IntegerArray &  ok, intSerialArray &  interpolates, int &  numberOfInvalidPoints, realSerialArray &  invalidPoint, const int &  printDiagnosticMessages = false, const bool &  tryBackupRules = false, const bool  saveInvalidPoints = true, int  lastChanceOption = 0  )

protected

This routine is called for points that could not be interpolated when perhaps they should be able to.

This routine will make several attempts to fix the situation including turning the point into a discretization point, reducing the width of interpolation or changing explicit interpolation into implicit interpolation.

Parameters

grid	(input) : interpolation points lie on this grid
ia(i,0:nd-1)	: a list of points to be checked. In parallel, each processor will have a different list.
ok(i)	(output) : ??
interpolates(i)	(output) : return true for points that could be fixed.
numberOfInvalidPoints	(output) : number of points that could not be fixed.
invalidPoint(i,0:nd-1)	(output) : coordinates of the invalid points (for plotting?)
printDiagnosticMessages	(input) : bit flag for diagnostic output.
lastChanceOption	(input) : 0=default, -1: do not remove un-needed points at the start

References adjustBoundary(), allowBackupRules, assert, aString, axis1, axis2, axis3, backupValues, backupValuesUsed, MappedGrid::boundaryCondition(), c, canDiscretize(), CompositeGridData::canInterpolate(), MappedGrid::center(), center, checkCanInterpolate(), checkForOneSided, computeInterpolationStencil(), debug, MappedGrid::dimension(), MappedGrid::discretizationWidth(), End, extendedGridIndexRange(), MappedGrid::extendedIndexRange(), fabs(), FALSE, GET_LOCAL, getLocalArrayWithGhostBoundaries(), MappingRC::getMapping(), MappingRC::getName(), Mapping::getName(), MappedGrid::getName(), MappedGrid::getRectangularGridParameters(), ParallelUtility::getSum(), MappedGrid::gridIndexRange(), GenericGridCollection::gridNumber, MappedGrid::gridSpacing(), MappedGrid::indexRange(), CompositeGrid::interpolationIsImplicit, CompositeGrid::interpolationOverlap, CompositeGrid::interpolationWidth, Mapping::intersects(), CompositeGrid::inverseCoordinates, CompositeGrid::inverseGrid, Mapping::inverseMap(), Mapping::inverseMapS(), MappedGrid::isAllCellCentered(), MappedGrid::ISdiscretizationPoint, MappedGrid::ISinteriorBoundaryPoint, MappedGrid::ISinterpolationPoint, MappedGrid::isRectangular(), MappedGrid::mapping(), Mapping::mappingName, Mapping::mapS(), mask, MappedGrid::mask(), mask2, max(), CompositeGrid::mayCutHoles, CompositeGrid::mayInterpolate, min(), myid, GenericGridCollection::numberOfBaseGrids(), GridCollection::numberOfDimensions(), MappedGrid::numberOfDimensions(), OV_ABORT, plogFile, printF(), r, R, CompositeGrid::rcData, REAL_EPSILON, MappedGrid::sharedBoundaryTolerance(), Start, TRUE, useBoundaryAdjustment, MappedGrid::USESbackupRules, x, XC, and XVC.

Referenced by classifyPoints().

int Ogen::markMaskAtGhost ( CompositeGrid &  cg )

protected

References MappedGrid::boundaryCondition(), MappedGrid::boundaryFlag(), debug, MappedGrid::dimension(), displayMask(), End, MappedGrid::extendedIndexRange(), FOR_3IJD, GET_LOCAL, getBoundaryIndex(), getGhostIndex(), ParallelUtility::getLocalArrayBounds(), MappedGrid::gridIndexRange(), i2, MappedGrid::ISghostPoint, MappedGrid::ISinteriorBoundaryPoint, logFile, mask, MASK, MappedGrid::mask(), MappedGrid::mixedPhysicalInterpolationBoundary, GenericGridCollection::numberOfBaseGrids(), intMappedGridFunction::periodicUpdate(), MappedGrid::physicalBoundary, sPrintF(), and Start.

Referenced by classifyPoints(), movingUpdate(), and movingUpdateNew().

int Ogen::markOffAxisRefinementMask ( int  numberOfDimensions, Index  Ivr[3], Index  Ivb[3], int  rf[3], intSerialArray &  mask, const intSerialArray &  maskb  )

protected

1) there must be a valid point on a face in each direction:

References axis1, axis2, axis3, evaluate(), FOR_3BR, FOR_3R, MASK, MASKB, min(), setRefinementMaskFace(), and Start.

Referenced by updateRefinement(), updateRefinementNew(), and updateRefinementNewer().

int Ogen::markPointsNeededForInterpolation ( CompositeGrid &  cg, const int &  grid, const int &  lowerOrUpper = -1  )

protected

References allowHangingInterpolation, assert, axis1, axis2, axis3, backupValues, MappedGrid::boundaryCondition(), c, debug, MappedGrid::dimension(), End, MappedGrid::extendedIndexRange(), FALSE, FOR_3D, GET_LOCAL, getIndex(), ParallelUtility::getLocalArrayBounds(), MappedGrid::gridIndexRange(), MappedGrid::gridSpacing(), i2, iab, MappedGrid::indexRange(), CompositeGrid::interpolationIsImplicit, CompositeGrid::interpolationOverlap, CompositeGrid::inverseCoordinates, CompositeGrid::inverseGrid, INVERSEGRID, MappedGrid::isCellCentered(), MappedGrid::ISinterpolationPoint, isNeededForDiscretization(), MappedGrid::isPeriodic(), jab, logFile, markPointsNeededForInterpolationNew(), MASK, MappedGrid::mask(), mask2, max(), min(), GenericGridCollection::numberOfBaseGrids(), GenericGridCollection::numberOfComponentGrids(), GridCollection::numberOfDimensions(), r, Start, TRUE, and MappedGrid::USESbackupRules.

Referenced by classifyPoints().

int Ogen::markPointsNeededForInterpolationNew ( CompositeGrid &  cg, const int &  grid, const int &  lowerOrUpper = -1  )

protected

References Overture::abort(), allowHangingInterpolation, assert, aString, axis1, axis2, axis3, backupValues, MappedGrid::boundaryCondition(), c, debug, MappedGrid::dimension(), End, MappedGrid::extendedIndexRange(), FOR_3D, GET_LOCAL, getIndex(), ParallelUtility::getLocalArrayBounds(), ParallelUtility::getMinValue(), MappedGrid::gridIndexRange(), MappedGrid::gridSpacing(), i2, iab, MappedGrid::indexRange(), CompositeGrid::interpolationIsImplicit, CompositeGrid::interpolationOverlap, CompositeGrid::inverseCoordinates, CompositeGrid::inverseGrid, INVERSEGRID, MappedGrid::isCellCentered(), MappedGrid::ISinterpolationPoint, isNeededForDiscretization(), MappedGrid::isPeriodic(), jab, MASK, MappedGrid::mask(), max(), min(), myid, GenericGridCollection::numberOfBaseGrids(), GenericGridCollection::numberOfComponentGrids(), GridCollection::numberOfDimensions(), OV_ABORT, Overture::OV_COMM, plogFile, printF(), saveGridToAFile(), Start, and MappedGrid::USESbackupRules.

Referenced by markPointsNeededForInterpolation().

int Ogen::markPointsReallyNeededForInterpolation ( CompositeGrid &  cg )

protected

References assert, axis1, axis2, axis3, backupValues, MappedGrid::boundaryCondition(), c, MappedGrid::dimension(), End, MappedGrid::extendedIndexRange(), FALSE, getIndex(), MappedGrid::gridIndexRange(), MappedGrid::gridSpacing(), i2, iab, MappedGrid::indexRange(), CompositeGrid::interpolationOverlap, CompositeGrid::inverseCoordinates, CompositeGrid::inverseGrid, MappedGrid::isCellCentered(), MappedGrid::ISinterpolationPoint, isOnInterpolationBoundary(), MappedGrid::isPeriodic(), jab, mask, MappedGrid::mask(), mask2, max(), min(), GenericGridCollection::numberOfBaseGrids(), GenericGridCollection::numberOfComponentGrids(), GridCollection::numberOfDimensions(), r, Start, TRUE, and MappedGrid::USESbackupRules.

int Ogen::movingUpdate ( CompositeGrid &  cg, CompositeGrid &  cgOld, const LogicalArray &  hasMoved, const MovingGridOption &  option = useOptimalAlgorithm  )

protected

References adjustBoundary(), assert, aString, axis1, axis2, axis3, backupValues, backupValuesUsed, CompositeGridData::boundaryAdjustment, boundaryCondition, MappedGrid::boundaryCondition(), c, canDiscretize(), CompositeGridData::canInterpolate(), MappedGrid::center(), center, checkForOneSided, checkOverlappingGrid(), GenericGridData::computedGeometry, GenericGridCollectionData::computedGeometry, GenericGridCollection::computedGeometry(), computeInterpolationStencil(), GenericGridCollection::COMPUTEnothing, debug, MappedGrid::dimension(), display(), displayMask(), End, ENDFORJP, ENDFORJP_STENCIL, MappedGrid::extendedIndexRange(), MappedGrid::extendedRange(), FALSE, FORJP, FORJP_STENCIL, generateInterpolationArrays(), TrivialArray< Type, Dim >::getBase(), TrivialArray< Type, Dim >::getBound(), getCPU(), MappingRC::getMapping(), MappedGrid::getRectangularGridParameters(), GI_COLOUR_INTERPOLATION_POINTS, GI_PLOT_INTERPOLATION_POINTS, MappedGrid::gridIndexRange(), MappedGrid::gridSpacing(), i2, ia, MappedGrid::indexRange(), info, CompositeGrid::interpolationCoordinates, interpolationCoordinates, CompositeGrid::interpolationOverlap, CompositeGrid::interpolationPoint, CompositeGrid::interpolationStartEndIndex, CompositeGrid::interpolationWidth, CompositeGrid::interpoleeGrid, interpoleeGrid, CompositeGrid::interpoleeLocation, interpoleeLocation, CompositeGrid::inverseCoordinates, CompositeGrid::inverseGrid, Mapping::inverseMap(), ip, MappedGrid::isAllCellCentered(), MappedGrid::isCellCentered(), MappedGrid::ISdiscretizationPoint, MappedGrid::ISinterpolationPoint, isMovingGridProblem, isNew, MappedGrid::isPeriodic(), MappedGrid::isRectangular(), MappedGrid::mapping(), markMaskAtGhost(), mask, MappedGrid::mask(), mask2, max(), min(), movingUpdateNew(), NULL, GenericGridCollection::numberOfBaseGrids(), GenericGridCollection::numberOfComponentGrids(), GridCollection::numberOfDimensions(), MappedGrid::numberOfDimensions(), CompositeGrid::numberOfInterpolationPoints, numberOfOrphanPoints, orphanPoint, outputMovingGrids(), plot(), plotOrphanPoints, psp, r, R, CompositeGrid::rcData, TrivialArray< Type, Dim >::redim(), GraphicsParameters::set(), Start, MappedGrid::THEcenter, CompositeGrid::THEinterpolationCoordinates, CompositeGrid::THEinterpolationPoint, CompositeGrid::THEinterpoleeGrid, CompositeGrid::THEinterpoleeLocation, CompositeGrid::THEinverseMap, GridCollection::THEmask, GenericGridCollection::THErefinementLevel, MappedGrid::THEvertex, timeUpdateGeometry, totalTime, TRUE, CompositeGrid::update(), MappedGrid::update(), updateBoundaryAdjustment(), updateOverlap(), useBoundaryAdjustment, MappedGrid::USESbackupRules, CompositeGrid::variableInterpolationWidth, x, and XC.

Referenced by updateOverlap().

int Ogen::movingUpdateNew ( CompositeGrid &  cg, CompositeGrid &  cgOld, const LogicalArray &  hasMoved, const MovingGridOption &  option = useOptimalAlgorithm  )

protected

The new moving grid generator (parallel version)

References Overture::abort(), adjustBoundary(), adjustSizeMacro, assert, aString, axis1, axis2, axis3, backupValues, backupValuesUsed, CompositeGridData::boundaryAdjustment, boundaryCondition, MappedGrid::boundaryCondition(), c, canDiscretize(), CompositeGridData::canInterpolate(), MappedGrid::center(), center, checkCanInterpolate(), checkForOneSided, checkOverlappingGrid(), GenericGridData::computedGeometry, GenericGridCollectionData::computedGeometry, GenericGridCollection::computedGeometry(), computeInterpolationStencil(), GenericGridCollection::COMPUTEnothing, debug, MappedGrid::dimension(), display(), displayMask(), End, ENDFORJP, ENDFORJP_STENCIL, MappedGrid::extendedIndexRange(), MappedGrid::extendedRange(), FORJP, FORJP_STENCIL, generateInterpolationArrays(), GET_LOCAL, TrivialArray< Type, Dim >::getBase(), TrivialArray< Type, Dim >::getBound(), getCPU(), ListOfIntSerialArray::getLength(), MappingRC::getMapping(), MappedGrid::getRectangularGridParameters(), GI_COLOUR_INTERPOLATION_POINTS, GI_PLOT_INTERPOLATION_POINTS, MappedGrid::gridIndexRange(), MappedGrid::gridSpacing(), i2, ia, MappedGrid::indexRange(), info, CompositeGrid::interpolationCoordinates, interpolationCoordinates, CompositeGridData::interpolationCoordinatesLocal, CompositeGrid::interpolationOverlap, CompositeGridData::interpolationPoint, CompositeGrid::interpolationPoint, CompositeGridData::interpolationPointLocal, CompositeGrid::interpolationStartEndIndex, CompositeGrid::interpolationWidth, CompositeGrid::interpoleeGrid, interpoleeGrid, CompositeGridData::interpoleeGridLocal, CompositeGrid::interpoleeLocation, interpoleeLocation, CompositeGridData::interpoleeLocationLocal, CompositeGrid::inverseCoordinates, CompositeGrid::inverseGrid, Mapping::inverseMap(), Mapping::inverseMapS(), ip, MappedGrid::isAllCellCentered(), MappedGrid::isCellCentered(), MappedGrid::ISdiscretizationPoint, MappedGrid::ISinterpolationPoint, isMovingGridProblem, isNew, MappedGrid::isPeriodic(), MappedGrid::isRectangular(), CompositeGridData::localInterpolationDataForAll, CompositeGridData::localInterpolationDataState, MappedGrid::mapping(), markMaskAtGhost(), mask, MappedGrid::mask(), mask2, max(), min(), myid, CompositeGridData::noLocalInterpolationData, NULL, GenericGridCollection::numberOfBaseGrids(), GenericGridCollection::numberOfComponentGrids(), GridCollection::numberOfDimensions(), MappedGrid::numberOfDimensions(), GenericGridCollection::numberOfGrids(), CompositeGrid::numberOfInterpolationPoints, CompositeGridData::numberOfInterpolationPointsLocal, numberOfOrphanPoints, orphanPoint, OV_GET_SERIAL_ARRAY_CONDITIONAL, plot(), plotOrphanPoints, printF(), psp, r, R, CompositeGrid::rcData, TrivialArray< Type, Dim >::redim(), GraphicsParameters::set(), sPrintF(), Start, MappedGrid::THEcenter, CompositeGrid::THEinterpolationCoordinates, CompositeGrid::THEinterpolationPoint, CompositeGrid::THEinterpoleeGrid, CompositeGrid::THEinterpoleeLocation, CompositeGrid::THEinverseMap, GridCollection::THEmask, GenericGridCollection::THErefinementLevel, MappedGrid::THEvertex, timeUpdateGeometry, totalTime, CompositeGrid::update(), MappedGrid::update(), updateBoundaryAdjustment(), updateOverlap(), useBoundaryAdjustment, MappedGrid::USESbackupRules, CompositeGrid::variableInterpolationWidth, CompositeGridData::variableInterpolationWidthLocal, x, and XC.

Referenced by movingUpdate().

int Ogen::oppositeBoundaryIndex ( MappedGrid &  g, const int &  ks, const int &  kd  )

protected

References MappedGrid::gridIndexRange(), max(), and min().

Referenced by adjustBoundary(), adjustBoundarySerial(), and getAdjustmentVectors().

int Ogen::plot ( const aString &  title, CompositeGrid &  cg, const int &  queryForChanges = TRUE  )

protected

References abs(), DialogData::addInfoLabel(), GenericGraphicsInterface::appendToTheDefaultPrompt(), assert, aString, buff, GUIState::buildPopup(), cutMapInfo, debug, displayMask(), GenericGraphicsInterface::erase(), fabs(), GraphicsParameters::get(), GenericGraphicsInterface::getAnswer(), GenericGraphicsInterface::getColourName(), ListOfMappingRC::getLength(), GenericGraphicsInterface::getLineWidthScaleFactor(), ParallelUtility::getMaxValue(), GenericGraphicsInterface::getMenuItem(), ParallelUtility::getSum(), DialogData::getTextValue(), DialogData::getToggleValue(), GI_COLOUR_INTERPOLATION_POINTS, GI_PLOT_BLOCK_BOUNDARIES, GI_PLOT_GRID_LINES, GI_PLOT_INTERPOLATION_POINTS, GI_PLOT_SHADED_SURFACE_GRIDS, GI_PLOT_THE_OBJECT_AND_EXIT, GI_POINT_COLOUR, GI_POINT_SIZE, GI_TOP_LABEL, GI_USE_PLOT_BOUNDS, holeCutters, holePoint, ia, incrementalHoleSweep, info, GenericGraphicsInterface::inputString(), MappingInformation::mappingList, mask, max(), myid, NULL, Overture::nullRealArray(), GenericGridCollection::numberOfBaseGrids(), GenericGraphicsInterface::numberOfColourNames, GenericGridCollection::numberOfComponentGrids(), GridCollection::numberOfDimensions(), numberOfHolePoints, numberOfOrphanPoints, orphanPoint, PlotIt::plot(), plotExplicitHoleCutters, plotHolePoints, plotOrphanPoints, GenericGraphicsInterface::plotPoints(), plotTitles, points(), pointSize, GenericGraphicsInterface::popGUI(), printF(), printOrphanPoints(), ps, psp, GenericGraphicsInterface::pushGUI(), queryAPoint(), R, resetTheGrid, saveGridToAFile(), GraphicsParameters::set(), DialogData::setExitCommand(), DialogData::setPushButtons(), DialogData::setTextBoxes(), DialogData::setToggleButtons(), DialogData::setWindowTitle(), sPrintF(), sScanF(), GenericGraphicsInterface::stopReadingCommandFile(), GenericGraphicsInterface::unAppendTheDefaultPrompt(), and GridCollection::USESbackupRules.

Referenced by changeParameters(), classifyPoints(), computeOverlap(), movingUpdate(), movingUpdateNew(), and queryAPoint().

int Ogen::preInterpolateGrids ( CompositeGrid &  cg )

protected

References adjustBoundary(), assert, axis1, axis2, axis3, MappedGrid::boundaryCondition(), GridCollection::boundingBox, boundingBox, c, CompositeGridData::canInterpolate(), MappedGrid::center(), center, checkForOneSided, debug, End, MappedGrid::extendedIndexRange(), getCPU(), getIndex(), MappedGrid::getName(), GenericGridCollection::gridNumber, i2, ia, info, CompositeGrid::inverseCoordinates, CompositeGrid::inverseGrid, MappedGrid::ISinterpolationPoint, isNeededForDiscretization(), mask, MappedGrid::mask(), min(), GenericGridCollection::numberOfBaseGrids(), GenericGridCollection::numberOfComponentGrids(), GridCollection::numberOfDimensions(), preInterpolate, printF(), r, R, R0, CompositeGrid::rcData, S, Start, timePreInterpolate, useBoundaryAdjustment, and x.

Referenced by checkInterpolationOnBoundaries().

int Ogen::printOrphanPoints

(

CompositeGrid &

cg

)

Print the locations of orphan points.

References fabs(), MappingRC::getMapping(), MappedGrid::getName(), MappedGrid::gridIndexRange(), MappedGrid::gridSpacing(), Mapping::inverseMap(), Mapping::inverseMapS(), MappedGrid::mapping(), GenericGridCollection::numberOfBaseGrids(), GridCollection::numberOfDimensions(), numberOfOrphanPoints, orphanPoint, printF(), r, and x.

Referenced by plot(), and queryAPoint().

int Ogen::projectToBoundary ( CompositeGrid &  cg, const int &  grid, const realArray &  r, const int  iv[3], const int  ivp[3], real  rv[3]  )

protected

References End, fabs(), min(), GridCollection::numberOfDimensions(), r, rBound, REAL_EPSILON, s, and Start.

Referenced by cutHoles().

int Ogen::projectToParameterBoundary ( const real  rv0[3], const real  rv1[3], real  rv[3], const int  numberOfDimensions, const int  grid  )

protected

References End, fabs(), min(), rBound, REAL_EPSILON, s, and Start.

Referenced by getHoleWidth().

int Ogen::queryAPoint ( CompositeGrid &  cg )

protected

References Overture::abort(), DialogData::addRadioBox(), GenericGraphicsInterface::appendToTheDefaultPrompt(), Mapping::approximateGlobalInverse, assert, aString, buff, c, MappedGrid::center(), center, debug, Mapping::debug, dim, MappedGrid::dimension(), MappedGrid::discretizationWidth(), GenericGraphicsInterface::erase(), fabs(), findClosestBoundaryPoint(), ApproximateGlobalInverse::findNearestGridPoint(), generateInterpolationArrays(), GraphicsParameters::get(), GenericGraphicsInterface::getAnswer(), GenericGraphicsInterface::getLineWidthScaleFactor(), MappingRC::getMapping(), MappedGrid::getName(), DialogData::getRadioBox(), GI_PLOT_THE_OBJECT_AND_EXIT, GI_POINT_COLOUR, GI_POINT_SIZE, MappedGrid::gridIndexRange(), MappedGrid::gridSpacing(), i2, interpolateAPoint(), Mapping::inverseMap(), Mapping::inverseMapS(), MappedGrid::mapping(), mask, MappedGrid::mask(), myid, SelectionInfo::nSelect, NULL, GenericGridCollection::numberOfBaseGrids(), GenericGridCollection::numberOfComponentGrids(), GridCollection::numberOfDimensions(), MappedGrid::numberOfDimensions(), numberOfOrphanPoints, orphanPoint, OV_GET_SERIAL_ARRAY_CONST, PlotIt::plot(), plot(), GenericGraphicsInterface::plotPoints(), pointSize, GenericGraphicsInterface::popGUI(), printF(), printOrphanPoints(), ps, psp, GenericGraphicsInterface::pushGUI(), r, R, SelectionInfo::selection, GraphicsParameters::set(), RadioBox::setCurrentChoice(), DialogData::setExitCommand(), DialogData::setPushButtons(), DialogData::setTextBoxes(), DialogData::setTextLabel(), DialogData::setToggleButtons(), DialogData::setToggleState(), DialogData::setWindowTitle(), sPrintF(), sScanF(), GenericGraphicsInterface::stopReadingCommandFile(), MappedGrid::THEcenter, MappedGrid::THEmask, MappedGrid::THEvertex, GenericGraphicsInterface::unAppendTheDefaultPrompt(), MappedGrid::update(), MappedGrid::vertex(), SelectionInfo::x, and x.

Referenced by plot().

int Ogen::removeExteriorPoints ( CompositeGrid &  cg, const bool  boundariesHaveCutHoles = FALSE  )

protected

References assert, MappedGrid::boundaryCondition(), MappedGrid::center(), checkCrossings(), countCrossingsWithRealBoundary(), End, MappedGrid::extendedIndexRange(), FALSE, getCPU(), getGhostIndex(), getIndex(), MappingRC::getName(), MappedGrid::gridIndexRange(), holePoint, i2, ia, info, CompositeGridData::initialize(), MappedGrid::isAllCellCentered(), MappedGrid::ISdiscretizationPoint, MappedGrid::isPeriodic(), MappedGrid::ISreservedBit0, MappedGrid::mapping(), Mapping::mappingName, mask, MappedGrid::mask(), max(), GenericGridCollection::numberOfBaseGrids(), GridCollection::numberOfDimensions(), numberOfHolePoints, R, SQR, Start, timeRemoveExteriorPoints, totalTime, TRUE, and x.

int Ogen::removeExteriorPointsNew ( CompositeGrid &  cg, const bool  boundariesHaveCutHoles = FALSE  )

protected

References abs(), assert, MappedGrid::boundaryCondition(), MappedGrid::center(), center, debug, displayMask(), End, extendedGridIndexRange(), GET_LOCAL, getCPU(), getGhostIndex(), getIndex(), ParallelUtility::getLocalArrayBounds(), getLocalArrayWithGhostBoundaries(), ParallelUtility::getMaxValue(), MappingRC::getName(), MappedGrid::getRectangularGridParameters(), MappedGrid::gridIndexRange(), holePoint, i2, info, MappedGrid::isAllCellCentered(), MappedGrid::isRectangular(), logFile, manualHole, MappedGrid::mapping(), Mapping::mappingName, mask, MappedGrid::mask(), max(), min(), GenericGridCollection::numberOfBaseGrids(), GridCollection::numberOfDimensions(), numberOfHolePoints, numberOfManualHoles, plogFile, pow(), printF(), R, sPrintF(), timeRemoveExteriorPoints, totalTime, and XC.

Referenced by computeOverlap().

int Ogen::resetGrid

(

CompositeGrid &

cg

)

References GET_LOCAL, CompositeGrid::inverseCoordinates, CompositeGrid::inverseGrid, MappedGrid::ISdiscretizationPoint, isNew, mask, GenericGridCollection::numberOfBaseGrids(), numberOfHolePoints, CompositeGrid::numberOfInterpolationPoints, numberOfOrphanPoints, MappedGrid::THEmask, CompositeGrid::update(), and useAnOldGrid.

Referenced by computeOverlap(), and updateOverlap().

int Ogen::saveGridToAFile ( CompositeGrid &  cg, aString &  gridFileName, aString &  gridName  )

static

References CompositeGrid::destroy(), MappedGrid::EVERYTHING, HDF_DataBase::mount(), GenericDataBase::normalMode, GenericDataBase::noStreamMode, printF(), HDF_DataBase::put(), CompositeGrid::put(), HDF_DataBase::setMode(), MappedGrid::THEmask, and HDF_DataBase::unmount().

Referenced by computeOverlap(), generateInterpolationArrays(), markPointsNeededForInterpolationNew(), plot(), and PlotIt::plotGrid().

void Ogen::set	(	const OgenParameterEnum	option,
		const bool	value
	)

References abortOnAlgorithmFailure, computeGeometryForMovingGrids, debug, improveQualityOfInterpolation, outputGridOnFailure, printF(), qualityBound, THEabortOnAlgorithmFailure, THEcomputeGeometryForMovingGrids, THEimproveQualityOfInterpolation, and THEoutputGridOnFailure.

void Ogen::set	(	const OgenParameterEnum	option,
		const int	value
	)

References computeGeometryForMovingGrids, debug, improveQualityOfInterpolation, printF(), qualityBound, THEcomputeGeometryForMovingGrids, THEimproveQualityOfInterpolation, and THEqualityBound.

void Ogen::set	(	const OgenParameterEnum	option,
		const real	value
	)

References improveQualityOfInterpolation, maximumAngleDifferenceForNormalsOnSharedBoundaries, printF(), qualityBound, THEimproveQualityOfInterpolation, THEmaximumAngleDifferenceForNormalsOnSharedBoundaries, and THEqualityBound.

int Ogen::setGridParameters ( CompositeGrid &  cg )

protected

References assert, GenericGridCollection::componentGridNumber, CompositeGrid::destroy(), End, CompositeGrid::EVERYTHING, gridIndexRange, GenericGridCollection::gridNumber, CompositeGrid::interpolationIsImplicit, CompositeGrid::interpolationOverlap, CompositeGrid::interpolationWidth, CompositeGrid::mayCutHoles, CompositeGrid::multigridCoarseningRatio, CompositeGrid::multigridLevel, CompositeGrid::multigridProlongationWidth, CompositeGrid::multigridRestrictionWidth, GenericGridCollection::numberOfComponentGrids(), GridCollection::numberOfDimensions(), MappedGrid::numberOfDimensions(), GenericGridCollection::numberOfMultigridLevels(), MappedGrid::setGridIndexRange(), MappedGrid::setNumberOfGhostPoints(), CompositeGrid::sharedSidesMayCutHoles, Start, and GenericGridCollection::THElists.

Referenced by updateOverlap().

int Ogen::setRefinementMaskFace ( intSerialArray &  mask, int  side, int  axis, int  numberOfDimensions, int  rf[3], Index &  I1r, Index &  I2r, Index &  I3r, const intSerialArray &  mask00, const intSerialArray &  mask10, const intSerialArray &  mask01, const intSerialArray &  mask11  )

protected

References assert.

Referenced by markOffAxisRefinementMask().

bool Ogen::sidesShareBoundary ( CompositeGrid &  cg, int  grid1, int  side1, int  dir1, int  grid2, int  side2, int  dir2  ) const

inlineprotected

return true if grid1 face=(side1,dir1) shares a boundary with grid2 face=(side2,dir2)

References manualSharedBoundary, and numberOfManualSharedBoundaries.

int Ogen::sweepOutHolePoints ( CompositeGrid &  cg )

protected

References assert, MappedGrid::boundaryCondition(), MappedGrid::center(), center, End, MappedGrid::extendedIndexRange(), getCPU(), getGhostIndex(), getIndex(), MappingRC::getName(), MappedGrid::getRectangularGridParameters(), MappedGrid::gridIndexRange(), holePoint, i2, incrementalHoleSweep, info, MappedGrid::isAllCellCentered(), MappedGrid::isRectangular(), MappedGrid::mapping(), Mapping::mappingName, mask, MappedGrid::mask(), GenericGridCollection::numberOfBaseGrids(), GridCollection::numberOfDimensions(), MappedGrid::numberOfDimensions(), numberOfHolePoints, pow(), printF(), timeRemoveExteriorPoints, totalTime, and XC.

Referenced by computeOverlap().

void Ogen::turnOffHybridHoleCutting ( )

inline

References classifyHolesForHybrid, and FALSE.

void Ogen::turnOnHybridHoleCutting ( )

inline

References classifyHolesForHybrid, and TRUE.

Referenced by ogen().

int Ogen::unmarkBoundaryInterpolationPoints ( CompositeGrid &  cg, const int &  grid  )

protected

References assert, MappedGrid::boundaryCondition(), MappedGrid::boundaryFlag(), c, canDiscretize(), End, MappedGrid::extendedIndexRange(), FOR_3D, GET_LOCAL, getBoundaryIndex(), ParallelUtility::getLocalArrayBounds(), MappingRC::getMapping(), MappingRC::getName(), Mapping::getTypeOfCoordinateSingularity(), MappedGrid::gridIndexRange(), i2, info, CompositeGrid::inverseCoordinates, CompositeGrid::inverseGrid, INVERSEGRID, MappedGrid::isAllVertexCentered(), MappedGrid::ISdiscretizationPoint, MappedGrid::ISinteriorBoundaryPoint, MappedGrid::ISinterpolationPoint, MappedGrid::mapping(), Mapping::mappingName, MASK, MappedGrid::mask(), GenericGridCollection::numberOfBaseGrids(), GenericGridCollection::numberOfComponentGrids(), GridCollection::numberOfDimensions(), MappedGrid::physicalBoundary, plogFile, Mapping::polarSingularity, and Start.

Referenced by classifyPoints().

int Ogen::unmarkInterpolationPoints ( CompositeGrid &  cg, const bool &  unMarkAll = FALSE  )

protected

References c, canDiscretize(), End, MappedGrid::extendedIndexRange(), FOR_3D, GET_LOCAL, getIndex(), ParallelUtility::getLocalArrayBounds(), MappingRC::getMapping(), Mapping::getTypeOfCoordinateSingularity(), MappedGrid::gridIndexRange(), i2, CompositeGrid::inverseGrid, INVERSEGRID, MappedGrid::isAllVertexCentered(), MappedGrid::ISdiscretizationPoint, MappedGrid::ISinterpolationPoint, MappedGrid::isPeriodic(), MappedGrid::mapping(), MASK, MappedGrid::mask(), GenericGridCollection::numberOfBaseGrids(), GenericGridCollection::numberOfComponentGrids(), GridCollection::numberOfDimensions(), Mapping::polarSingularity, and Start.

Referenced by classifyPoints().

int Ogen::updateBoundaryAdjustment ( CompositeGrid &  cg, const int &  grid, const int &  grid2, intSerialArray *  iag, realSerialArray *  rg, realSerialArray *  xg, IntegerArray &  sidesShare  )

protected

References Overture::abort(), abs(), adjustBoundary(), assert, axis1, axis2, axis3, GenericGridCollection::baseGridNumber, BoundaryAdjustment::boundaryAdjustment(), CompositeGridData::boundaryAdjustment, boundaryEps, MappedGrid::boundingBox(), boundingBox, checkBoundaryAdjustment(), checkForBoundaryAdjustments(), Overture::checkMemoryUsage(), BoundaryAdjustment::computedGeometry, GenericGridCollectionData::computedGeometry, debug, delta, BoundaryAdjustment::destroy(), determineBoundaryPointsToAdjust(), dim, MappedGrid::dimension(), BoundaryAdjustment::doNotShare, End, fabs(), FALSE, FOR_3D, GET_LOCAL_CONST, getAdjustmentVectors(), TrivialArray< Type, Dim >::getBase(), TrivialArray< Type, Dim >::getBound(), getBoundaryIndex(), ParallelUtility::getLocalArrayBounds(), getLocalArrayWithGhostBoundaries(), MappingRC::getMapping(), MappedGrid::getName(), TrivialArray< Type, Dim >::getNumberOfElements(), MappedGrid::getRectangularGridParameters(), MappedGrid::gridIndexRange(), BoundaryAdjustment::hasSharedSides(), i2, ia, info, Mapping::inverseMapC(), Mapping::inverseMapCS(), MappedGrid::isAllCellCentered(), MappedGrid::isAllVertexCentered(), isNew, MappedGrid::isRectangular(), manualSharedBoundary, MappedGrid::mapping(), MappedGrid::mask(), mask1, max(), Overture::nullIntArray(), Overture::nullRealArray(), GenericGridCollection::numberOfBaseGrids(), GenericGridCollection::numberOfComponentGrids(), GridCollection::numberOfDimensions(), MappedGrid::numberOfDimensions(), numberOfManualSharedBoundaries, plogFile, printF(), r, R, CompositeGrid::rcData, TrivialArray< Type, Dim >::redim(), BoundaryAdjustment::share, BoundaryAdjustment::shareButNoAdjustmentNeeded, BoundaryAdjustment::sidesShare(), sPrintF(), Start, THEinverseMap, THEmask, useBoundaryAdjustment, MappedGrid::vertex(), MappedGrid::vertexBoundaryNormal(), MappedGrid::vertexBoundaryNormalArray(), BoundaryAdjustment::wasCreated(), and XV1.

Referenced by checkInterpolationOnBoundaries(), movingUpdate(), and movingUpdateNew().

int Ogen::updateCanInterpolate ( CompositeGrid &  cg, CompositeGrid &  cg0, RealArray &  removedPointBound  )

protected

References adjustBoundary(), assert, c, canDiscretize(), CompositeGridData::canInterpolate(), checkForOneSided, debug, End, MappedGrid::extendedIndexRange(), FALSE, getIndex(), GenericGridCollection::gridNumber, gridSpacing, i2, ia, Mapping::intersects(), CompositeGrid::inverseCoordinates, CompositeGrid::inverseGrid, Mapping::inverseMap(), MappedGrid::ISdiscretizationPoint, MappedGrid::ISinterpolationPoint, mask, MappedGrid::mask(), GenericGridCollection::numberOfBaseGrids(), GenericGridCollection::numberOfComponentGrids(), GridCollection::numberOfDimensions(), MappedGrid::numberOfDimensions(), plogFile, printF(), CompositeGrid::rcData, Start, TRUE, useBoundaryAdjustment, MappedGrid::vertex(), and x.

Referenced by classifyPoints().

int Ogen::updateGeometry ( CompositeGrid &  cg, CompositeGrid &  cgOld, const bool &  movingGrids = FALSE, const IntegerArray &  hasMoved = Overture::nullIntArray()  )

protected

References boundingBox, buildBounds(), GenericGridData::computedGeometry, GenericGridCollectionData::computedGeometry, computeGeometryForMovingGrids, GenericGrid::COMPUTEnothing, GenericGridCollection::COMPUTEnothing, debug, End, GenericGrid::geometryHasChanged(), geometryNeedsUpdating, getCPU(), gridScale, info, CompositeGrid::inverseCoordinates, CompositeGrid::inverseGrid, MappedGrid::ISdiscretizationPoint, isNew, MappedGrid::isRectangular(), MappedGrid::mask(), max(), GenericGridCollection::numberOfBaseGrids(), GenericGridCollection::numberOfComponentGrids(), GridCollection::numberOfDimensions(), numberOfGridsHasChanged, printF(), rBound, Start, MappedGrid::THEboundingBox, MappedGrid::THEcenter, CompositeGrid::THEinverseMap, GridCollection::THEmask, MappedGrid::THEmask, MappedGrid::THEvertex, MappedGrid::THEvertexBoundaryNormal, CompositeGrid::update(), MappedGrid::update(), and warnForSharedSides.

Referenced by changeParameters(), and updateOverlap().

int Ogen::updateOverlap	(	CompositeGrid &	cg,
		MappingInformation &	mapInfo
	)

References Overture::getGraphicsInterface(), MappingInformation::graphXInterface, NULL, and ps.

Referenced by computeOverlap(), main(), movingUpdate(), movingUpdateNew(), and ogen().

int Ogen::updateOverlap

(

CompositeGrid &

cg

)

References assert, aString, GenericGridCollection::baseGridNumber, GraphicsParameters::colourByGrid, GenericGridCollection::componentGridNumber, GenericGridCollectionData::computedGeometry, GenericGridCollection::COMPUTEnothing, computeOverlap(), debug, determineMinimalIndexRange(), FALSE, geometryNeedsUpdating, getCPU(), GenericGraphicsInterface::getMenuItem(), GI_BOUNDARY_COLOUR_OPTION, GI_COLOUR_INTERPOLATION_POINTS, GI_PLOT_BLOCK_BOUNDARIES, GI_PLOT_LINES_ON_GRID_BOUNDARIES, GI_PLOT_SHADED_SURFACE_GRIDS, GI_PLOT_THE_OBJECT_AND_EXIT, GenericGridCollection::gridNumber, info, CompositeGrid::interpolationCoordinates, CompositeGrid::interpolationPoint, CompositeGrid::interpoleeGrid, CompositeGrid::interpoleeLocation, isNew, maskRatio, CompositeGrid::multigridLevel, NULL, GenericGridCollection::numberOfBaseGrids(), GenericGridCollection::numberOfComponentGrids(), GridCollection::numberOfDimensions(), numberOfGridsHasChanged, numberOfHolePoints, CompositeGrid::numberOfInterpolationPoints, GenericGridCollection::numberOfMultigridLevels(), numberOfOrphanPoints, pow(), ps, psp, resetGrid(), resetTheGrid, GraphicsParameters::set(), setGridParameters(), GenericGraphicsInterface::stopReadingCommandFile(), CompositeGrid::THEinterpolationCoordinates, CompositeGrid::THEinterpolationPoint, CompositeGrid::THEinterpoleeGrid, CompositeGrid::THEinterpoleeLocation, GridCollection::THEmask, GenericGridCollection::THEmultigridLevel, timeUpdateGeometry, totalTime, TRUE, CompositeGrid::update(), updateGeometry(), and CompositeGrid::variableInterpolationWidth.

int Ogen::updateOverlap	(	CompositeGrid &	cg,
		CompositeGrid &	cgNew,
		const LogicalArray &	hasMoved,
		const MovingGridOption &	option = useOptimalAlgorithm
	)

References abs(), assert, GenericGridCollection::baseGridNumber, boundingBox, intMappedGridFunction::breakReference(), buildBounds(), GenericGridData::computedGeometry, GenericGridCollectionData::computedGeometry, computeGeometryForMovingGrids, GenericGridCollection::COMPUTEnothing, computeOverlap(), debug, End, MappedGrid::extendedIndexRange(), FALSE, GenericGrid::geometryHasChanged(), GET_NUMBER_OF_ARRAYS, getCPU(), GI_PLOT_THE_OBJECT_AND_EXIT, MappedGrid::gridIndexRange(), gridScale, MappedGrid::indexRange(), info, CompositeGrid::inverseCoordinates, CompositeGrid::inverseGrid, MappedGrid::ISdiscretizationPoint, isMovingGridProblem, MappedGrid::isRectangular(), MappedGridData::mask, MappedGrid::mask(), max(), movingUpdate(), NULL, numberOfArrays, GenericGridCollection::numberOfBaseGrids(), GenericGridCollection::numberOfComponentGrids(), GridCollection::numberOfDimensions(), numberOfGridsHasChanged, numberOfHolePoints, CompositeGrid::numberOfInterpolationPoints, numberOfOrphanPoints, printF(), psp, MappedGrid::rcData, GenericGridCollection::refinementLevelNumber, GraphicsParameters::set(), Start, MappedGrid::THEboundingBox, MappedGrid::THEcenter, CompositeGrid::THEinverseMap, GridCollection::THEmask, MappedGrid::THEmask, GenericGridCollection::THErefinementLevel, MappedGrid::THEvertex, MappedGrid::THEvertexBoundaryNormal, timeUpdateGeometry, totalTime, TRUE, CompositeGrid::update(), MappedGrid::update(), MappedGrid::updateReferences(), useNewMovingUpdate, useOptimalAlgorithm, and warnForSharedSides.

int Ogen::updateParameters	(	CompositeGrid &	cg,
		const int	level = -1,
		const RealArray &	minimumOverlap = Overture::nullRealArray()
	)

References MappedGrid::discretizationWidth(), MappedGrid::extendedIndexRange(), CompositeGrid::interpolationIsImplicit, CompositeGrid::interpolationOverlap, CompositeGrid::interpolationWidth, max(), min(), GenericGridCollection::numberOfBaseGrids(), GenericGridCollection::numberOfComponentGrids(), GridCollection::numberOfDimensions(), GenericGridCollection::numberOfMultigridLevels(), and GenericGridCollection::refinementLevelNumber.

Referenced by changeParameters(), updateRefinement(), updateRefinementNew(), and updateRefinementNewer().

int Ogen::updateRefinement	(	CompositeGrid &	cg,
		const int &	refinementLevel = -1
	)

References Overture::abort(), abs(), assert, axis1, axis2, axis3, GenericGridCollection::baseGridNumber, MappedGrid::boundaryCondition(), buff, CompositeGridData::canInterpolate(), canInterpolate(), checkForOneSided, checkRefinementInterpolation(), GenericGridData::computedGeometry, GenericGridCollectionData::computedGeometry, GenericGridCollection::COMPUTEnothing, debug, MappedGrid::dimension(), MappedGrid::discretizationWidth(), display(), displayMask(), dx, End, evaluate(), MappedGrid::extendedIndexRange(), FALSE, floorDiv(), fmod(), FOR_3BR, FOR_3D, FOR_3S, fPrintF(), Mapping::functionPeriodic, getBoundaryIndex(), getCPU(), getIndex(), MappedGrid::getRectangularGridParameters(), GIR, MappedGrid::gridIndexRange(), GenericGridCollection::gridNumber, MappedGrid::gridSpacing(), i2, ig, il, indexRange, MappedGrid::indexRange(), CompositeGrid::interpolationCoordinates, interpolationCoordinates, CompositeGrid::interpolationOverlap, CompositeGrid::interpolationPoint, interpolationPointBaseGrid, CompositeGrid::interpolationStartEndIndex, CompositeGrid::interpolationWidth, interpoleeBaseGrid, CompositeGrid::interpoleeGrid, interpoleeGrid, CompositeGrid::interpoleeLocation, interpoleeLocation, ip, IP, IPBG, MappedGrid::isAllCellCentered(), MappedGrid::isCellCentered(), MappedGrid::ISdiscretizationPoint, MappedGrid::ISghostPoint, MappedGrid::ISinterpolationPoint, isPeriodic, MappedGrid::isPeriodic(), MappedGrid::isRectangular(), l3, CompositeGridData::localInterpolationDataForAll, CompositeGridData::localInterpolationDataForAMR, CompositeGridData::localInterpolationDataState, logFile, markOffAxisRefinementMask(), mask, MASK, MappedGrid::mask(), MASKB, MASKR, max(), min(), GenericGridCollection::numberOfBaseGrids(), GenericGridCollection::numberOfComponentGrids(), GridCollection::numberOfDimensions(), MappedGrid::numberOfGhostPoints(), CompositeGrid::numberOfInterpolationPoints, numberOfPossibleInterpoleeBaseGrids, GenericGridCollection::numberOfRefinementLevels(), outputRefinementInfo(), intMappedGridFunction::periodicUpdate(), plogFile, r, R, CompositeGrid::rcData, GridCollection::refinementFactor, GridCollection::refinementLevel, GridCollection::setMaskAtRefinements(), sPrintF(), Start, MappedGrid::THEcenter, CompositeGrid::THEinterpolationCoordinates, CompositeGrid::THEinterpolationPoint, CompositeGrid::THEinterpoleeGrid, CompositeGrid::THEinterpoleeLocation, GridCollection::THEmask, MappedGrid::THEmask, MappedGrid::THEvertex, totalTime, TRUE, CompositeGrid::update(), updateParameters(), updateRefinementNewer(), CompositeGrid::variableInterpolationWidth, variableInterpolationWidth, MappedGrid::vertex(), VERTEX0, VERTEX1, and VERTEX2.

Referenced by main().

int Ogen::updateRefinementFillInterpolationData	(	CompositeGrid &	cg,
		UpdateRefinementData &	urd
	)

References Overture::abort(), assert, axis3, B, IndexBox::base(), GenericGridCollection::baseGridNumber, IndexBox::bound(), MappedGrid::boundaryCondition(), buff, canInterpolate(), CanInterpolate::cgCanInterpolate(), checkForOneSided, Overture::checkMemoryUsage(), ciLocal, computeInterpolationStencil(), CopyArray::copyCoarseToFine(), debug, display(), displayMask(), dx, End, MappedGrid::extendedIndexRange(), FALSE, floorDiv(), fmod(), fPrintF(), Mapping::functionPeriodic, getCPU(), getIndex(), getLocalArrayWithGhostBoundaries(), ParallelUtility::getMaxValues(), MappedGrid::getRectangularGridParameters(), GIR, MappedGrid::gridIndexRange(), GenericGridCollection::gridNumber, MappedGrid::gridSpacing(), i2, ia, ig, il, ilLocal, indexRange, MappedGrid::indexRange(), interpCoords, CompositeGrid::interpolationCoordinates, interpolationCoordinates, CompositeGridData::interpolationCoordinatesLocal, CompositeGrid::interpolationOverlap, CompositeGrid::interpolationPoint, interpolationPointBaseGrid, CompositeGridData::interpolationPointLocal, CompositeGrid::interpolationStartEndIndex, CompositeGrid::interpolationWidth, interpoleeBaseGrid, CompositeGrid::interpoleeGrid, interpoleeGrid, CompositeGridData::interpoleeGridLocal, interpoleeLocation, CompositeGridData::interpoleeLocationLocal, IndexBox::intersect(), ip, IP, IPBG, MappedGrid::isCellCentered(), IndexBox::isEmpty(), MappedGrid::ISinterpolationPoint, isPeriodic, MappedGrid::isPeriodic(), MappedGrid::isRectangular(), l3, logFile, mask, MappedGrid::mask(), MASKB, max(), min(), myid, Overture::nullRealArray(), GenericGridCollection::numberOfBaseGrids(), GenericGridCollection::numberOfComponentGrids(), GridCollection::numberOfDimensions(), CompositeGrid::numberOfInterpolationPoints, CompositeGridData::numberOfInterpolationPointsLocal, numberOfPossibleInterpoleeBaseGrids, GenericGridCollection::numberOfRefinementLevels(), outputRefinementInfoNew(), plogFile, pow(), printF(), IndexBox::processor, ParallelUtility::redistribute(), GridCollection::refinementFactor, GridCollection::refinementLevel, IndexBox::setBounds(), sPrintF(), Start, UpdateRefinementData::timeForCopyInterpPoints, UpdateRefinementData::timeForInterpData, variableInterpolationWidth, CompositeGridData::variableInterpolationWidthLocal, MappedGrid::vertex(), VERTEX0, VERTEX1, and VERTEX2.

Referenced by updateRefinementNewer().

int Ogen::updateRefinementFillInterpolationDataNew	(	CompositeGrid &	cg,
		UpdateRefinementData &	urd
	)

References Overture::abort(), assert, axis3, B, GenericGridCollection::baseGridNumber, MappedGrid::boundaryCondition(), buff, CanInterpolate::canInterpolate(), canInterpolate(), checkForOneSided, ciLocal, CopyArray::copyCoarseToFine(), debug, display(), displayMask(), CanInterpolate::CanInterpolateQueryData::donor, dx, End, MappedGrid::extendedIndexRange(), FALSE, floorDiv(), fmod(), fPrintF(), Mapping::functionPeriodic, getCPU(), getIndex(), getLocalArrayWithGhostBoundaries(), ParallelUtility::getMaxValue(), MappedGrid::getRectangularGridParameters(), GIR, CanInterpolate::CanInterpolateQueryData::grid, MappedGrid::gridIndexRange(), GenericGridCollection::gridNumber, MappedGrid::gridSpacing(), CanInterpolate::CanInterpolateQueryData::i, i2, CanInterpolate::CanInterpolateQueryData::id, ig, CanInterpolate::CanInterpolateResultData::il, il, indexRange, MappedGrid::indexRange(), interpCoords, CompositeGrid::interpolationCoordinates, interpolationCoordinates, CompositeGridData::interpolationCoordinatesLocal, CompositeGrid::interpolationIsImplicit, CompositeGrid::interpolationPoint, interpolationPointBaseGrid, CompositeGridData::interpolationPointLocal, CompositeGrid::interpolationStartEndIndex, CompositeGrid::interpolationWidth, interpoleeBaseGrid, CompositeGrid::interpoleeGrid, interpoleeGrid, CompositeGridData::interpoleeGridLocal, interpoleeLocation, CompositeGridData::interpoleeLocationLocal, ip, IP, IPBG, ir, MappedGrid::isCellCentered(), MappedGrid::ISinterpolationPoint, isPeriodic, MappedGrid::isPeriodic(), MappedGrid::isRectangular(), l3, logFile, MappedGrid::mask(), MASKB, max(), min(), myid, NULL, Overture::nullRealArray(), GenericGridCollection::numberOfBaseGrids(), GenericGridCollection::numberOfComponentGrids(), GridCollection::numberOfDimensions(), CompositeGridData::numberOfInterpolationPointsLocal, numberOfPossibleInterpoleeBaseGrids, GenericGridCollection::numberOfRefinementLevels(), outputRefinementInfoNew(), OV_ABORT, plogFile, printF(), ParallelUtility::redistribute(), GridCollection::refinementFactor, GridCollection::refinementLevel, GenericGridCollection::refinementLevelNumber, CanInterpolate::CanInterpolateQueryData::rv, sPrintF(), Start, UpdateRefinementData::timeForCopyInterpPoints, UpdateRefinementData::timeForInterpData, CanInterpolate::transferInterpDataForAMR(), variableInterpolationWidth, CompositeGridData::variableInterpolationWidthLocal, MappedGrid::vertex(), VERTEX0, VERTEX1, VERTEX2, and CanInterpolate::CanInterpolateResultData::width.

Referenced by updateRefinementNewer().

int Ogen::updateRefinementNew	(	CompositeGrid &	cg,
		const int &	refinementLevel = -1
	)

References Overture::abort(), abs(), ListOfFloatSerialArray::addElement(), ListOfIntSerialArray::addElement(), assert, axis1, axis2, axis3, B, GenericGridCollection::baseGridNumber, MappedGrid::boundaryCondition(), buff, canInterpolate(), CanInterpolate::cgCanInterpolate(), checkForOneSided, checkRefinementInterpolation(), GenericGridCollectionData::computedGeometry, GenericGridCollection::COMPUTEnothing, CopyArray::copyCoarseToFine(), debug, ListOfIntSerialArray::deleteElement(), ListOfFloatSerialArray::deleteElement(), MappedGrid::dimension(), MappedGrid::discretizationWidth(), display(), displayMask(), dx, End, MappedGrid::extendedIndexRange(), FALSE, floorDiv(), fmod(), FOR_3BR, FOR_3D, FOR_3IJD, FOR_3S, Mapping::functionPeriodic, CopyArray::getAggregateArray(), getBoundaryIndex(), getCPU(), getIndex(), ListOfFloatSerialArray::getLength(), ListOfIntSerialArray::getLength(), ParallelUtility::getLocalArrayBounds(), getLocalArrayWithGhostBoundaries(), ParallelUtility::getMaxValue(), MappedGrid::getRectangularGridParameters(), GIR, MappedGrid::gridIndexRange(), GenericGridCollection::gridNumber, MappedGrid::gridSpacing(), i2, ig, il, indexRange, MappedGrid::indexRange(), interpCoords, CompositeGrid::interpolationCoordinates, interpolationCoordinates, CompositeGridData::interpolationCoordinatesLocal, CompositeGrid::interpolationOverlap, CompositeGrid::interpolationPoint, interpolationPointBaseGrid, CompositeGridData::interpolationPointLocal, CompositeGrid::interpolationStartEndIndex, CompositeGrid::interpolationWidth, interpoleeBaseGrid, CompositeGrid::interpoleeGrid, interpoleeGrid, CompositeGridData::interpoleeGridLocal, interpoleeLocation, CompositeGridData::interpoleeLocationLocal, ip, IP, IPBG, MappedGrid::isCellCentered(), MappedGrid::ISdiscretizationPoint, MappedGrid::ISghostPoint, MappedGrid::ISinterpolationPoint, isPeriodic, MappedGrid::isPeriodic(), MappedGrid::isRectangular(), l3, logFile, markOffAxisRefinementMask(), mask, MASK, MappedGrid::mask(), MASKB, MASKR, max(), min(), myid, NULL, Overture::nullRealArray(), GenericGridCollection::numberOfBaseGrids(), GenericGridCollection::numberOfComponentGrids(), GridCollection::numberOfDimensions(), MappedGrid::numberOfGhostPoints(), GenericGridCollection::numberOfGrids(), CompositeGrid::numberOfInterpolationPoints, CompositeGridData::numberOfInterpolationPointsLocal, numberOfPossibleInterpoleeBaseGrids, GenericGridCollection::numberOfRefinementLevels(), outputRefinementInfoNew(), plogFile, r, R, redistribute(), GridCollection::refinementFactor, GridCollection::refinementLevel, GridCollection::setMaskAtRefinements(), sPrintF(), Start, MappedGrid::THEcenter, CompositeGrid::THEinterpolationCoordinates, CompositeGrid::THEinterpolationPoint, CompositeGrid::THEinterpoleeGrid, CompositeGrid::THEinterpoleeLocation, GridCollection::THEmask, MappedGrid::THEmask, MappedGrid::THEvertex, totalTime, TRUE, CompositeGrid::update(), updateParameters(), variableInterpolationWidth, CompositeGridData::variableInterpolationWidthLocal, MappedGrid::vertex(), VERTEX0, VERTEX1, and VERTEX2.

int Ogen::updateRefinementNewer	(	CompositeGrid &	cg,
		const int &	refinementLevel = -1
	)

References Overture::abort(), abs(), ListOfIntSerialArray::addElement(), ListOfFloatSerialArray::addElement(), assert, axis1, axis2, axis3, GenericGridCollection::baseGridNumber, buff, checkForOneSided, Overture::checkMemoryUsage(), checkRefinementInterpolation(), GenericGridCollectionData::computedGeometry, GenericGridCollection::COMPUTEnothing, CopyArray::copyCoarseToFine(), debug, ListOfIntSerialArray::deleteElement(), ListOfFloatSerialArray::deleteElement(), MappedGrid::dimension(), MappedGrid::discretizationWidth(), displayMask(), End, MappedGrid::extendedIndexRange(), FALSE, floorDiv(), FOR_3BR, FOR_3D, FOR_3IJD, FOR_3S, fPrintF(), CopyArray::getAggregateArray(), getBoundaryIndex(), getCPU(), getIndex(), ListOfIntSerialArray::getLength(), ListOfFloatSerialArray::getLength(), ParallelUtility::getLocalArrayBounds(), getLocalArrayWithGhostBoundaries(), ParallelUtility::getMaxValue(), MappedGrid::gridIndexRange(), GenericGridCollection::gridNumber, i2, MappedGrid::indexRange(), CompositeGridData::interpolationCoordinatesLocal, CompositeGridData::interpolationPointLocal, CompositeGridData::interpoleeGridLocal, CompositeGridData::interpoleeLocationLocal, ip, IP, MappedGrid::ISdiscretizationPoint, MappedGrid::ISghostPoint, MappedGrid::ISinterpolationPoint, l3, logFile, markOffAxisRefinementMask(), mask, MASK, MappedGrid::mask(), MASKB, MASKR, max(), min(), myid, NULL, GenericGridCollection::numberOfBaseGrids(), GenericGridCollection::numberOfComponentGrids(), GridCollection::numberOfDimensions(), MappedGrid::numberOfGhostPoints(), GenericGridCollection::numberOfGrids(), CompositeGrid::numberOfInterpolationPoints, CompositeGridData::numberOfInterpolationPointsLocal, GenericGridCollection::numberOfRefinementLevels(), outputRefinementInfoNew(), plogFile, r, R, GridCollection::refinementFactor, GridCollection::refinementLevel, GridCollection::setMaskAtRefinements(), sPrintF(), Start, MappedGrid::THEcenter, CompositeGrid::THEinterpolationCoordinates, CompositeGrid::THEinterpolationPoint, CompositeGrid::THEinterpoleeGrid, CompositeGrid::THEinterpoleeLocation, GridCollection::THEmask, MappedGrid::THEmask, MappedGrid::THEvertex, UpdateRefinementData::timeForCopyInterpPoints, UpdateRefinementData::timeForInterpData, totalTime, TRUE, CompositeGrid::update(), updateParameters(), updateRefinementFillInterpolationData(), updateRefinementFillInterpolationDataNew(), and CompositeGridData::variableInterpolationWidthLocal.

Referenced by updateRefinement().

Member Data Documentation

bool Ogen::abortOnAlgorithmFailure

protected

Referenced by computeOverlap(), initialize(), and set().

bool Ogen::allowBackupRules

protected

Referenced by changeParameters(), initialize(), and lastChanceInterpolation().

bool Ogen::allowHangingInterpolation

protected

Referenced by classifyPoints(), initialize(), markPointsNeededForInterpolation(), and markPointsNeededForInterpolationNew().

intSerialArray* Ogen::backupValues

protected

Referenced by classifyPoints(), generateInterpolationArrays(), initialize(), lastChanceInterpolation(), markPointsNeededForInterpolation(), markPointsNeededForInterpolationNew(), markPointsReallyNeededForInterpolation(), movingUpdate(), and movingUpdateNew().

IntegerArray Ogen::backupValuesUsed

protected

Referenced by classifyPoints(), generateInterpolationArrays(), lastChanceInterpolation(), movingUpdate(), and movingUpdateNew().

real Ogen::boundaryEps

protected

Referenced by adjustForNearbyBoundaries(), buildBounds(), checkInterpolationOnBoundaries(), cutHoles(), cutHolesNew(), cutHolesNewer(), determineBoundaryPointsToAdjust(), initialize(), and updateBoundaryAdjustment().

char Ogen::buff[200]

protected

Referenced by changeParameters(), checkInterpolationOnBoundaries(), classifyPoints(), classifyRedundantPoints(), generateInterpolationArrays(), plot(), queryAPoint(), updateRefinement(), updateRefinementFillInterpolationData(), updateRefinementFillInterpolationDataNew(), updateRefinementNew(), and updateRefinementNewer().

FILE* Ogen::checkFile

protected

Referenced by computeOverlap(), initialize(), and ~Ogen().

bool Ogen::checkForOneSided

protected

Referenced by classifyPoints(), initialize(), interpolateAll(), interpolateAPoint(), interpolatePoints(), lastChanceInterpolation(), movingUpdate(), movingUpdateNew(), preInterpolateGrids(), updateCanInterpolate(), updateRefinement(), updateRefinementFillInterpolationData(), updateRefinementFillInterpolationDataNew(), updateRefinementNew(), and updateRefinementNewer().

bool Ogen::classifyHolesForHybrid

protected

Referenced by changeParameters(), classifyPoints(), initialize(), turnOffHybridHoleCutting(), and turnOnHybridHoleCutting().

int Ogen::computeGeometryForMovingGrids

protected

Referenced by initialize(), set(), updateGeometry(), and updateOverlap().

MappingInformation Ogen::cutMapInfo

protected

Referenced by plot().

int Ogen::debug

Referenced by adjustBoundary(), adjustBoundarySerial(), buildACompositeGrid(), buildBounds(), changeParameters(), checkBoundaryAdjustment(), checkHoleCutting(), checkInterpolationOnBoundaries(), checkUpdateRefinement(), classifyPoints(), classifyRedundantPoints(), computeOverlap(), countCrossingsWithRealBoundary(), cutHoles(), cutHolesNew(), cutHolesNewer(), determineBoundaryPointsToAdjust(), determineMinimalIndexRange(), explicitHoleCutting(), getAdjustmentVectors(), improveQuality(), initialize(), interpolateAll(), interpolateAPoint(), interpolateMixedBoundary(), interpolatePoints(), lastChanceInterpolation(), main(), markMaskAtGhost(), markPointsNeededForInterpolation(), markPointsNeededForInterpolationNew(), movingUpdate(), movingUpdateNew(), plot(), preInterpolateGrids(), queryAPoint(), removeExteriorPointsNew(), set(), updateBoundaryAdjustment(), updateCanInterpolate(), updateGeometry(), updateOverlap(), updateRefinement(), updateRefinementFillInterpolationData(), updateRefinementFillInterpolationDataNew(), updateRefinementNew(), and updateRefinementNewer().

int Ogen::defaultInterpolationIsImplicit

Referenced by buildACompositeGrid(), and initialize().

int Ogen::defaultNumberOfGhostPoints

Referenced by buildACompositeGrid(), and initialize().

bool Ogen::doubleCheckInterpolation

Referenced by computeOverlap(), and initialize().

IntegerArray Ogen::geometryNeedsUpdating

protected

Referenced by changeParameters(), updateGeometry(), and updateOverlap().

RealArray Ogen::gridScale

protected

Referenced by countCrossingsWithRealBoundary(), updateGeometry(), and updateOverlap().

ListOfMappingRC* Ogen::holeCutters

protected

Referenced by changeParameters(), cutHolesNew(), explicitHoleCutting(), initialize(), plot(), and ~Ogen().

int Ogen::holeCuttingOption

protected

Referenced by changeParameters(), computeOverlap(), and initialize().

RealArray Ogen::holePoint

protected

Referenced by buildCutout(), checkCrossings(), cutHoles(), cutHolesNew(), cutHolesNewer(), explicitHoleCutting(), plot(), removeExteriorPoints(), removeExteriorPointsNew(), and sweepOutHolePoints().

bool Ogen::improveQualityOfInterpolation

protected

Referenced by changeParameters(), classifyPoints(), initialize(), interpolateAll(), and set().

int Ogen::incrementalHoleSweep

protected

Referenced by computeOverlap(), initialize(), plot(), and sweepOutHolePoints().

int Ogen::info

Referenced by buildACompositeGrid(), buildCutout(), checkForOrphanPointsOnBoundaries(), checkHoleCutting(), checkInterpolationOnBoundaries(), classifyPoints(), computeOverlap(), countCrossingsWithRealBoundary(), cutHoles(), cutHolesNew(), cutHolesNewer(), findBestGuess(), findTrueBoundary(), generateInterpolationArrays(), getHoleWidth(), improveQuality(), initialize(), interpolateAll(), movingUpdate(), movingUpdateNew(), plot(), preInterpolateGrids(), removeExteriorPoints(), removeExteriorPointsNew(), sweepOutHolePoints(), unmarkBoundaryInterpolationPoints(), updateBoundaryAdjustment(), updateGeometry(), and updateOverlap().

int Ogen::isMovingGridProblem

Referenced by computeOverlap(), initialize(), movingUpdate(), movingUpdateNew(), and updateOverlap().

IntegerArray Ogen::isNew

protected

Referenced by checkInterpolationOnBoundaries(), classifyPoints(), computeOverlap(), cutHoles(), cutHolesNew(), cutHolesNewer(), interpolateAll(), movingUpdate(), movingUpdateNew(), resetGrid(), updateBoundaryAdjustment(), updateGeometry(), and updateOverlap().

bool Ogen::loadBalanceGrids

Referenced by buildACompositeGrid(), initialize(), and ogen().

FILE* Ogen::logFile

protected

Referenced by buildBounds(), checkHoleCutting(), checkInterpolationOnBoundaries(), classifyPoints(), classifyRedundantPoints(), computeOverlap(), cutHoles(), cutHolesNewer(), getAdjustmentVectors(), initialize(), interpolateMixedBoundary(), markMaskAtGhost(), markPointsNeededForInterpolation(), removeExteriorPointsNew(), updateRefinement(), updateRefinementFillInterpolationData(), updateRefinementFillInterpolationDataNew(), updateRefinementNew(), updateRefinementNewer(), and ~Ogen().

bool Ogen::makeAdjustmentsForNearbyBoundaries

protected

Referenced by classifyPoints(), and initialize().

IntegerArray Ogen::manualHole

protected

Referenced by changeParameters(), cutHoles(), cutHolesNew(), cutHolesNewer(), and removeExteriorPointsNew().

RealArray Ogen::manualHoleValue

protected

IntegerArray Ogen::manualSharedBoundary

protected

Referenced by changeParameters(), checkForBoundaryAdjustments(), checkInterpolationOnBoundaries(), sidesShareBoundary(), and updateBoundaryAdjustment().

RealArray Ogen::manualSharedBoundaryValue

protected

Referenced by changeParameters().

int Ogen::maskRatio[3]

protected

Referenced by countCrossingsWithRealBoundary(), initialize(), and updateOverlap().

real Ogen::maximumAngleDifferenceForNormalsOnSharedBoundaries

protected

Referenced by changeParameters(), checkInterpolationOnBoundaries(), initialize(), and set().

int Ogen::maximumNumberOfPointsToInvertAtOneTime

protected

Referenced by changeParameters(), initialize(), and interpolateAll().

bool Ogen::minimizeTheOverlap

protected

Referenced by changeParameters(), classifyPoints(), and initialize().

IntegerArray Ogen::mixedBoundary

protected

Referenced by changeParameters(), checkInterpolationOnBoundaries(), and interpolateMixedBoundary().

RealArray Ogen::mixedBoundaryValue

protected

Referenced by changeParameters(), and interpolateMixedBoundary().

int Ogen::myid

Referenced by adjustBoundary(), buildACompositeGrid(), changeParameters(), checkForBoundaryAdjustments(), classifyPoints(), cutHolesNew(), cutHolesNewer(), getHoleWidth(), initialize(), interpolateAPoint(), lastChanceInterpolation(), markPointsNeededForInterpolationNew(), movingUpdateNew(), plot(), queryAPoint(), updateRefinementFillInterpolationData(), updateRefinementFillInterpolationDataNew(), updateRefinementNew(), and updateRefinementNewer().

IntegerArray Ogen::nonCuttingBoundaryPoints

protected

Referenced by changeParameters(), cutHoles(), cutHolesNew(), and cutHolesNewer().

int Ogen::numberOfArrays

protected

Referenced by initialize(), and updateOverlap().

bool Ogen::numberOfGridsHasChanged

protected

Referenced by updateGeometry(), and updateOverlap().

int Ogen::numberOfHolePoints

protected

Referenced by buildCutout(), checkCrossings(), computeOverlap(), cutHoles(), cutHolesNew(), cutHolesNewer(), explicitHoleCutting(), initialize(), plot(), removeExteriorPoints(), removeExteriorPointsNew(), resetGrid(), sweepOutHolePoints(), and updateOverlap().

int Ogen::numberOfManualHoles

protected

Referenced by changeParameters(), cutHoles(), cutHolesNew(), cutHolesNewer(), initialize(), and removeExteriorPointsNew().

int Ogen::numberOfManualSharedBoundaries

protected

Referenced by changeParameters(), checkForBoundaryAdjustments(), checkInterpolationOnBoundaries(), initialize(), sidesShareBoundary(), and updateBoundaryAdjustment().

int Ogen::numberOfMixedBoundaries

protected

Referenced by changeParameters(), checkInterpolationOnBoundaries(), classifyPoints(), and initialize().

int Ogen::numberOfNonCuttingBoundaries

protected

Referenced by changeParameters(), cutHoles(), cutHolesNew(), cutHolesNewer(), and initialize().

int Ogen::numberOfOrphanPoints

protected

Referenced by checkForOrphanPointsOnBoundaries(), checkHoleCutting(), computeOverlap(), cutHoles(), cutHolesNew(), cutHolesNewer(), initialize(), movingUpdate(), movingUpdateNew(), plot(), printOrphanPoints(), queryAPoint(), resetGrid(), and updateOverlap().

int Ogen::numberOfSharedBoundaryTolerances

protected

Referenced by changeParameters(), and initialize().

RealArray Ogen::orphanPoint

protected

Referenced by checkForOrphanPointsOnBoundaries(), checkHoleCutting(), computeOverlap(), cutHoles(), cutHolesNew(), cutHolesNewer(), movingUpdate(), movingUpdateNew(), plot(), printOrphanPoints(), and queryAPoint().

bool Ogen::outputGridOnFailure

protected

Referenced by computeOverlap(), initialize(), and set().

FILE * Ogen::plogFile

protected

Referenced by adjustBoundary(), adjustBoundarySerial(), checkBoundaryAdjustment(), checkHoleCutting(), checkInterpolationOnBoundaries(), classifyPoints(), cutHolesNew(), cutHolesNewer(), determineBoundaryPointsToAdjust(), explicitHoleCutting(), getAdjustmentVectors(), getHoleWidth(), initialize(), interpolateAll(), interpolatePoints(), lastChanceInterpolation(), markPointsNeededForInterpolationNew(), removeExteriorPointsNew(), unmarkBoundaryInterpolationPoints(), updateBoundaryAdjustment(), updateCanInterpolate(), updateRefinement(), updateRefinementFillInterpolationData(), updateRefinementFillInterpolationDataNew(), updateRefinementNew(), updateRefinementNewer(), and ~Ogen().

bool Ogen::plotExplicitHoleCutters

protected

Referenced by initialize(), and plot().

IntegerArray Ogen::plotHolePoints

protected

Referenced by computeOverlap(), and plot().

IntegerArray Ogen::plotOrphanPoints

protected

Referenced by cutHoles(), cutHolesNew(), cutHolesNewer(), movingUpdate(), movingUpdateNew(), and plot().

bool Ogen::plotTitles

protected

Referenced by initialize(), and plot().

IntegerArray Ogen::preInterpolate

protected

Referenced by changeParameters(), and preInterpolateGrids().

GenericGraphicsInterface* Ogen::ps

protected

Referenced by changeParameters(), chooseASide(), classifyPoints(), computeOverlap(), Ogen(), plot(), queryAPoint(), and updateOverlap().

GraphicsParameters Ogen::psp

protected

Referenced by computeOverlap(), movingUpdate(), movingUpdateNew(), plot(), queryAPoint(), and updateOverlap().

real Ogen::qualityBound

protected

Referenced by changeParameters(), improveQuality(), initialize(), and set().

RealArray Ogen::rBound

protected

Referenced by adjustBoundary(), adjustBoundarySerial(), adjustForNearbyBoundaries(), buildBounds(), checkInterpolationOnBoundaries(), classifyPoints(), cutHoles(), cutHolesNew(), cutHolesNewer(), interpolateMixedBoundary(), projectToBoundary(), projectToParameterBoundary(), and updateGeometry().

IntegerArray Ogen::sharedBoundaryTolerances

protected

Referenced by changeParameters().

RealArray Ogen::sharedBoundaryTolerancesValue

protected

Referenced by changeParameters().

real Ogen::timeAllInterpolation

protected

Referenced by classifyPoints(), computeOverlap(), and initialize().

real Ogen::timeCheckHoleCutting

protected

Referenced by checkHoleCutting(), cutHolesNew(), cutHolesNewer(), and initialize().

real Ogen::timeCutHoles

protected

Referenced by computeOverlap(), cutHoles(), cutHolesNew(), cutHolesNewer(), and initialize().

real Ogen::timeFindTrueBoundary

protected

Referenced by findTrueBoundary(), and initialize().

real Ogen::timeImproperInterpolation

protected

Referenced by classifyPoints(), computeOverlap(), and initialize().

real Ogen::timeImproveQuality

protected

Referenced by classifyPoints(), computeOverlap(), and initialize().

real Ogen::timeInterpolateBoundaries

protected

Referenced by checkInterpolationOnBoundaries(), computeOverlap(), and initialize().

real Ogen::timePreInterpolate

protected

Referenced by checkInterpolationOnBoundaries(), initialize(), and preInterpolateGrids().

real Ogen::timeProperInterpolation

protected

Referenced by classifyPoints(), computeOverlap(), and initialize().

real Ogen::timeRemoveExteriorPoints

protected

Referenced by computeOverlap(), initialize(), removeExteriorPoints(), removeExteriorPointsNew(), and sweepOutHolePoints().

real Ogen::timeRemoveRedundant

protected

Referenced by classifyPoints(), computeOverlap(), and initialize().

real Ogen::timeUpdateGeometry

protected

Referenced by computeOverlap(), initialize(), movingUpdate(), movingUpdateNew(), and updateOverlap().

real Ogen::totalTime

protected

Referenced by checkInterpolationOnBoundaries(), classifyPoints(), computeOverlap(), cutHoles(), cutHolesNew(), cutHolesNewer(), findTrueBoundary(), initialize(), movingUpdate(), movingUpdateNew(), removeExteriorPoints(), removeExteriorPointsNew(), sweepOutHolePoints(), updateOverlap(), updateRefinement(), updateRefinementNew(), and updateRefinementNewer().

bool Ogen::useAnOldGrid

protected

Referenced by buildACompositeGrid(), and resetGrid().

bool Ogen::useBoundaryAdjustment

protected

Referenced by changeParameters(), checkInterpolationOnBoundaries(), classifyPoints(), cutHoles(), cutHolesNew(), cutHolesNewer(), initialize(), interpolateAll(), interpolateAPoint(), interpolatePoints(), lastChanceInterpolation(), movingUpdate(), movingUpdateNew(), preInterpolateGrids(), updateBoundaryAdjustment(), and updateCanInterpolate().

bool Ogen::useLocalBoundingBoxes

protected

Referenced by changeParameters(), and initialize().

bool Ogen::useNewMovingUpdate

Referenced by initialize(), and updateOverlap().

IntegerArray Ogen::warnForSharedSides

protected

Referenced by checkInterpolationOnBoundaries(), updateGeometry(), and updateOverlap().

---

The documentation for this class was generated from the following files:

• Ogen.h
• adjustBoundary.C
• boundaryAdjustment.C
• buildCutout.C
• changeParameters.C
• check.C
• checkOverlap.C
• classify.C
• computeOverlap.C
• cutHoles.C
• cutHolesNew.C
• cutHolesNewer.C
• explicitHoleCutting.C
• getHoleWidth.C
• improveQuality.C
• interpolatePoints.C
• lastChance.C
• markPointsNeeded.C
• movingUpdate.C
• movingUpdateNew.C
• Ogen.C
• updateRefineFillInterp.C
• updateRefineFillInterpNew.C
• updateRefinement.C
• updateRefinementNew.C
• updateRefinementNewer.C